Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01196 ATGGGTTTCGGTAGTTGTTCAAATCTATTTTCTGTTTTGTTCATTTTATGTTGCTATTTGTTACACTTTAGTATTGCCATAGATACCATCACATCATCCCAATTTATCAAGGACCCTGAGACTCTAATCTCCAAAGATGGTAACTTCACCTTTGGATTCTTTAGCCCTAAAAATTCTACTAGTCGTTACGTTGGAATTTGGTGGAAGTCTCAATCTACAATCATATGGGTGGCAAATAGAAACCAACCAATGAACGACTCCAATGGGACTGCCACGATATATGAAGATGGAAATCTTGTGGTATTAAATGGACAGAAACGAGTCATTTGGTCATCAAATGTTTCCAACATAGCATCCAATACAAGCTGTCAGTTTTCAGACTTTGGTAACATTGTCCTTTTGGAGAGCACAACTGGAAACATCTTATGGCAGAGTATTCAGCAACCTTCAGATACATTTCTTCCAGGCATAAAACTTTACACCAACAAAAGAACTGGCAAGAGAGTAAAACTCACATCATGGAAAAGCTCTTCTGACCCCTCTGTTGGCAACTTCTCTTTTAGTACTGTTGAACACCTAAATATACTTGAAGTGTTCATTTGGAATGAAACTCGACCATGCTGGCGCAGTGGTCCTTGGAATGGTGGGGTCTTTACTGGGATACAAACAATGAAACTCGCATATCTTAATACTTTTCAAGTTGGAGATGATGCAGAAGGAAATATTGGTATGTCTTATACAATATCAAATGAGGAGGAATTGGGGATCTATCACCTGAACTCACAAGGGAAATTAGAAGAAACAGGGTGGGATGATGAGAAGAAAGAAATGCAAGTTTCATGGACTAGCCGAATGTCGGAGTGTGATGTTTATGGAATTTGTGGGGTATTCGCTAGATGTAATTCATTGAGCTCACCGATATGCAGCTGTTTGAGAGGATTTGAACCTATGAGCATACATGAATGGACTCGTCACAACTGGACTAGTGGGTGTGTTAGGAGGACACCTTTGCAATTGCAGTGTAAAAGTGTTAACAACAAAACCACTAGTACAAAGGAAGATGGGTTTTTGAAATTGAAGATGGTTAAAGTTCCTGATTTTGCAGAAGGAACAGCTGTGACACCAGACAAATGCAGAAGCTTATGCTTAGAGAATTGCTCCTGCGTCGCATATTCACATGATACTAGGATTGGATGCATGTCTTGGACAAAGGATTTACTTGACATACAAGAACTCCAAAGTGGAGGACTTGATCTATATTTTCGTGTAGCCCACACAGAGCTTGAAAGAGGGAGAAACAAAACAATCATCATCGCAATTATGGTTACAATAGGAACTCTCATTATTGTCATCTGCACATATATCATGTGGAGAAAGACTTCAAACGACTCAGTTAATACTAGTGACGGGGTAATTGGAGACCTGTCCCAGATTAAACTACAAGAGCTAATACTATTTGATTTTGGAAAGCTTGCAACTGCCACTAACAACTTCCACTTATCCAACAAGCTTGGAGAGGGTGGTTTTGGTCCAGTGTACAAGGGAAAACTACACGATGGTCAGGAAATAGCAGTTAAGAGACTTTCTAGAGCATCTGGACAAGGCTTAGAAGAATTCATGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTACTTGGCTGCTGTATAGATGATGATGAAAAGATGTTGATGTACGAGGACATGCCAAACAGTAGTTTGGATGCATTTATCTTTGATCCATCAAAAAGTAAACTCCTAGATTGGAGAACCCGGTATACCATTATAGAAGGAATAGCTCGAGGATTGTTGTATCTTCACAGAGATTCAAGACTACGAATTATACACAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGATGAGCTGAATCCAAAAATTTCTGACTTTGGTATGGCTAGAATCTTTGGAGGCAGAGAAGATCAGGCCAATACTAACAGGGTTGTTGGAACTTCATTTTGTAAGACATACGTGGCAGATAGCATAGAACATGAAGAACTCTAA 2040 0.3926 MGFGSCSNLFSVLFILCCYLLHFSIAIDTITSSQFIKDPETLISKDGNFTFGFFSPKNSTSRYVGIWWKSQSTIIWVANRNQPMNDSNGTATIYEDGNLVVLNGQKRVIWSSNVSNIASNTSCQFSDFGNIVLLESTTGNILWQSIQQPSDTFLPGIKLYTNKRTGKRVKLTSWKSSSDPSVGNFSFSTVEHLNILEVFIWNETRPCWRSGPWNGGVFTGIQTMKLAYLNTFQVGDDAEGNIGMSYTISNEEELGIYHLNSQGKLEETGWDDEKKEMQVSWTSRMSECDVYGICGVFARCNSLSSPICSCLRGFEPMSIHEWTRHNWTSGCVRRTPLQLQCKSVNNKTTSTKEDGFLKLKMVKVPDFAEGTAVTPDKCRSLCLENCSCVAYSHDTRIGCMSWTKDLLDIQELQSGGLDLYFRVAHTELERGRNKTIIIAIMVTIGTLIIVICTYIMWRKTSNDSVNTSDGVIGDLSQIKLQELILFDFGKLATATNNFHLSNKLGEGGFGPVYKGKLHDGQEIAVKRLSRASGQGLEEFMNEVVVICKLQHRNLVRLLGCCIDDDEKMLMYEDMPNSSLDAFIFDPSKSKLLDWRTRYTIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDDELNPKISDFGMARIFGGREDQANTNRVVGTSFCKTYVADSIEHEEL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01196 679 Gene3D - 23 147 IPR036426 -
Trre13g01196 679 ProSiteProfiles Protein kinase domain profile. 498 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01196 679 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre13g01196 679 ProSiteProfiles PAN/Apple domain profile. 341 424 IPR003609 -
Trre13g01196 679 Gene3D Transferase(Phosphotransferase) domain 1 574 671 - -
Trre13g01196 679 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 574 665 - -
Trre13g01196 679 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Trre13g01196 679 SMART ntp_6 351 423 IPR003609 -
Trre13g01196 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Trre13g01196 679 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Trre13g01196 679 Pfam D-mannose binding lectin 73 175 IPR001480 -
Trre13g01196 679 CDD B_lectin 33 145 IPR001480 -
Trre13g01196 679 SUPERFAMILY Protein kinase-like (PK-like) 482 664 IPR011009 -
Trre13g01196 679 CDD PAN_AP_plant 338 424 - -
Trre13g01196 679 SMART serkin_6 498 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01196 679 Pfam Protein kinase domain 498 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01196 679 SMART blect_4 33 149 IPR001480 -
Trre13g01196 679 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Trre13g01196 679 FunFam receptor-like serine/threonine-protein kinase SD1-8 473 573 - -
Trre13g01196 679 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 663 - -
Trre13g01196 679 Gene3D Phosphorylase Kinase; domain 1 474 572 - -
Trre13g01196 679 Pfam PAN-like domain 351 409 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01196 Trre-Chr13 9430706 9433312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01196 426 663 Receptor kinase-like Gene Family AT4G05200 56.198 1.81e-79 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01196 Pkinase 2.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01196 - - mtr:25498365 1072.77