Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01195 ATGGGTTTCATCGGTTGTTCAATTCTATTTTCTGTTATTTTCATTCTATGTTGCTATTTGTTACACTTTAGTATTGCCATAGACACCATAACATCATCCCAATTCATCAAGGGCGCTGAAACTCTAATTTCCAAAGATGGTAACTTCACCTTTGGATTCTTTAGCCCTATAAATTCTACAAACCGCTACGTTGGAATTTGGTGGAAGTCTCAATCTACAATCATATGGGTGGCAAACAGAAACCAACCGATGAACGATTCGAATGGGACTGTCGCAATATATAAAGATAGAAATCTTGTGGTATTAAATGGACAGCAACAAGTCATTTGGTCATCAAATGTTTCCAACATAGCATCCAATACAAGTTGTCAGTTTTCAGACTTTGGTAACCTTGTCCTTCTGGAGAGCACAACCGGAAACATTTTATGGCAGAGTATAGAGCAACCTTCAGATACATTACTTCCCAGCATGAAACTATCAATGAACAAAAAAACAGGCAAGAGTCTAAAACTCAAATCATGGAAAAGCCCTTCTGATCCATCCGTTAGCAACTTCTCTTGTAGTACCTTTGAACAAAAAACTATAATTCAAGTGTTCATTTGGAATGGAACTCGACCATATTGGCGCAGTGGTCCCTGGAATGGCGGGGTGTTCACTGGGGTACATACAATGACAGTTGCATATTTTTTTGGTTTTCGAGTAGGAGATGATGGAGAAGGAAATATTGACATATATTATACAGTACAAAACGACGAGGAGTTTTTGGTCTATCGCCTGACAACACAAGGAAAATTAGACGAAATGCGGTGGGATGTTGAGAAAAAAGAAATGAAAGTGACATGGACAACCAGAGAATCAGAGTGCGATGTTTATGGTACATGTGGGGCATTTGCAAGCTGTAATTCATTGAGCTCACCAATATGTAGCTGTTTGAAAGGATTTGAACCCAGAAACATACAAGAATGGGATATACATAACTGGACTGGTGGCTGTGTTAGGAGAACACCTTTGCAGTGTGAAAGGCTCAACAATAAAACCACAAGTAGAAAGGAAGATGGATTTTTGAAACTACAGATGGTTAAAGTACCAGATTTTGCAGAAGGTGCAGCTGTTACACCAGACATATGCAGAAGCTCATGCTTGCATTATTGCTCTTGCATTGCGTATGCTCATGATGCCGGGATTGGCTGTATGTCTTGGACTACGAATCTACTTGATATAAAACAAGTCGAAAGTGGAGGACTTGATCTATATGTTCGTGTAGCTCAACCTGAAAGAGGGAGAAACAAAACTATCATCATTACAATACCGGTGATAATAGGAATTCTCATAATTGTCCTTTTTGCATATATCATGTGGAGAAGGACTTCAAAAAACTCAGATAAATCGACAAGGAAAAAGAAGAACAATGCTTTCCGACTATTCAATAAAGGTAGAATATCAGAACAAGATAATAATGACAAAGTAATTGGAGGACTATCCCAAGTTAAACTACAAGAGCTAATACTATTTGACTTTGGAAAGATTGCTTCCGCCACAAACAACTTCCACTTGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCAGTATACATGGGGAAACTGCAAGATGGTCAAGAAATAGCGGTGAAAAGACTTTCTAGAGCATCTGGTCAAGGGCTAGAAGAATTCATGAATGAAGTAGTTGTTCTTTGTAAACTACAACACCGCAATCTTGTGAAACTTCTTGGCTGCTGTATTGAAGGTGATGAAAAGATGTTGGTGTATGAGTATATGTCAAACAAAAGTTTGGATGCATGCATCTTTGATTCATCGAAAAATAAACTACTAGATTGGAGGACACGATATAGCATCATAGAAGGAATAGCTCGAGGATTGCTATATCTTCACAGGGATTCTAGACTAAGAATTATACATAGAGATTTGAAGGCAAGTAATATATTGTTAGATGAGGAGCTGAATCCAAAAATATCAGATTTTGGAATGGCTAGAATCTTTGGAGGGAGAGAAGATCAAGCCAACACTACTAGAGTTGTCGGAACTTATGGCTATATGTCTCCTGAATATGCAATGCAAGGACTATTTTCGGAGAAATCAGATGTTTTTAGCTTTGGTGTTTTGATACTTGAGATCATTAGTGGGAGAAGAAACTCAAGCTTTTACGACAATGAGCATGCTCTGAGCCTTTTAGGATTTGTCTGGATACAATGGCGAGAAGGAAATATTTTATCTTTAATGGATCCAGAAGTATATGATCATAGTGATCATAATTATATTTCAAGGTGCATACACATAGGGCTGTTGTGTGTACAAGAACTTGCTGCAGATAGGCCTACTATGGCTGCAGTAATTTCTATGCTTATAAGTGAGGCTGCATTTCTTCCTCCTCCTAGTCAGCCTGCTTTCATTTTGAGGCAGAATATGTTGAACTCGAAGTCGCCTGACGAAAATCAAAATGCTCTATCCATCAATATGGTCAGTATTACAGACATATCTGGCAGATAG 2505 0.3844 MGFIGCSILFSVIFILCCYLLHFSIAIDTITSSQFIKGAETLISKDGNFTFGFFSPINSTNRYVGIWWKSQSTIIWVANRNQPMNDSNGTVAIYKDRNLVVLNGQQQVIWSSNVSNIASNTSCQFSDFGNLVLLESTTGNILWQSIEQPSDTLLPSMKLSMNKKTGKSLKLKSWKSPSDPSVSNFSCSTFEQKTIIQVFIWNGTRPYWRSGPWNGGVFTGVHTMTVAYFFGFRVGDDGEGNIDIYYTVQNDEEFLVYRLTTQGKLDEMRWDVEKKEMKVTWTTRESECDVYGTCGAFASCNSLSSPICSCLKGFEPRNIQEWDIHNWTGGCVRRTPLQCERLNNKTTSRKEDGFLKLQMVKVPDFAEGAAVTPDICRSSCLHYCSCIAYAHDAGIGCMSWTTNLLDIKQVESGGLDLYVRVAQPERGRNKTIIITIPVIIGILIIVLFAYIMWRRTSKNSDKSTRKKKNNAFRLFNKGRISEQDNNDKVIGGLSQVKLQELILFDFGKIASATNNFHLSNKLGQGGFGPVYMGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVLCKLQHRNLVKLLGCCIEGDEKMLVYEYMSNKSLDACIFDSSKNKLLDWRTRYSIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMARIFGGREDQANTTRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIISGRRNSSFYDNEHALSLLGFVWIQWREGNILSLMDPEVYDHSDHNYISRCIHIGLLCVQELAADRPTMAAVISMLISEAAFLPPPSQPAFILRQNMLNSKSPDENQNALSINMVSITDISGR 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01195 834 SMART blect_4 33 149 IPR001480 -
Trre13g01195 834 Gene3D Transferase(Phosphotransferase) domain 1 592 792 - -
Trre13g01195 834 Pfam Protein tyrosine and serine/threonine kinase 517 786 IPR001245 GO:0004672|GO:0006468
Trre13g01195 834 Pfam PAN-like domain 349 407 IPR003609 -
Trre13g01195 834 SMART ntp_6 349 421 IPR003609 -
Trre13g01195 834 FunFam receptor-like serine/threonine-protein kinase SD1-8 487 591 - -
Trre13g01195 834 ProSiteProfiles Protein kinase domain profile. 516 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01195 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Trre13g01195 834 PIRSF SRK 3 834 IPR024171 GO:0004674
Trre13g01195 834 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Trre13g01195 834 SMART serkin_6 516 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01195 834 SUPERFAMILY Protein kinase-like (PK-like) 501 816 IPR011009 -
Trre13g01195 834 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre13g01195 834 CDD STKc_IRAK 522 787 - -
Trre13g01195 834 CDD PAN_AP_plant 335 422 - -
Trre13g01195 834 Gene3D Phosphorylase Kinase; domain 1 479 591 - -
Trre13g01195 834 CDD B_lectin 33 149 IPR001480 -
Trre13g01195 834 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Trre13g01195 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 795 - -
Trre13g01195 834 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 778 - -
Trre13g01195 834 Pfam D-mannose binding lectin 73 175 IPR001480 -
Trre13g01195 834 Gene3D - 23 146 IPR036426 -
Trre13g01195 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Trre13g01195 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01195 Trre-Chr13 9425866 9429013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01195 426 814 Receptor kinase-like Gene Family AT4G05200 50.765 7.44e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01195 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01195 - - mtr:25498365 1336.24