Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01194 ATGGTTTTCAGCAACTATGCATATTTGTTGTCCGTTATATTCATTTTGTTTTGCTATTTGTTACGTGTTAGTATCGGTATAGACACGATCACATCATCTCAATTTATCAAGGACCCCGAAACTCTAGTCTCCAAAGATGGTAACTTCACTTTTGGATTCTTTAGTCCTAAAAATTCTACAAATCGATACGTTGGAATTTGGTGGAAGTCTCAATCTACAGTCATATGGGTGGCAAACAGAAACCAGGCGCTGAATGATTCGAATGGGACTGTCGCGATATTTGTAGATGGCAATCTTGTCGTATTAAATGGACATAAACAAGTCATTTGGTCATCAAATGTTTCGAACATAGCATCCAATACAACTTCACAGTTTTCGGAGTTCGGTAACCTTGTCCTTTTGGAGAGCAAAACAAGAAACATTTTATGGCAGAGTATTGAGCAACCGTCGGATACATTACTTCCTAGCATGAAACTATCAATCGACAAAAGAACAGGTAAGAGTGTAAAACTCAGATCATGGAAAAGCCCTTCTGATCCATCGGTTGGAAACTTCTCTGCTAGTACTATTGAACGCCAACATATACTTGAAGTAATCATTTGGAATGAAACTCGAACATTCTGGCGCAGCGGTCCTTGGAATGGTGGGGTCTTCACTGGGATACAGGCAATGACAATGGCGTATTTTTTTGGTTTTCAAGCTGGAGATGATGGCGAAGGGAATACTGTTATATATTACACAATACAAAATGATGGCGATTTTTTTATCTATCACTTGAATTCAAAAGGGATATTAGAAGAAACACGGTGGGATGATACGAAGAAAGAAGTTCGTGTTACATGGACCAGCAAAGACTCAGAATGTGATGTTTATGGCATATGCGGGACATTTGCAACGTGTAATTCATTGAGCTCACCAATATGCAGCTGTTTGAGAGGATTTGAACCGAGAGACATAGGTGAATGGAATAGAAAAAACTGGACCGGTGGATGCATTAGGAGGACACCGTTGCAGTGTGAAGGAGTCGACAATAAAACCGCGAGTAGAAAGGAAGACGGATTTTTGAAACTGCAGATTATTAAAGTTCCAGATTTTGCCGAAGGTTTAACTGTTACATCAGACAGATGCAGAAACTTATGCTTGAAGAATTGCTCTTGCCTTGCATATTCTCATATTGATGGGATTGGATGTCTGTCTTGGACTGAAAATCTACTTGACATACAACAACTCCAAATCGGAGGACTTGATCTGTATGTTCGTGTGGCCTACGCAGAACTTGATAGAGGGAGAAACATGACGATCGTCATTATAAGTACAGTGATAATCGGAATTCTCATAATTGTCATTTGTGCATATATCATGTGGAGAAGAAGATCAAACCATCCAGCTAAACTATGGCACTTTGTTAAATCAGCAAGGAAAAAGAATAATAAATCTTTCCAACTTTTTAATAAAGGTGGATCACCAGAACATTATACTACTGACAACGAAATCGGAGAGTTATTAATATTCGATTTTGAAAAGCTTGCAACTGCCACAAATAACTTCCATTTGTCCAACAAACTTGGACATGGCGGTTTTGGTACAGTATACAAGGGGAAACTGCAAGATGGTCAAGAAATAGCGGTTAAAAGACTTTCTCGAGCATCTGGACAAGGGCTAGAAGAATACATGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGCTGTTGTATCGAAGGCGATGAGAAAATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTCATCTTTGATCCGTCAAAAAATAAACTCCTAGATTGGAAGACACGGTATAACATTATAGAAGGAATAGCTCGAGGATTGCTATATCTTCACAGAGATTCTAGATTAAGAATTATTCATAGAGATTTGAAGGCAAGTAATGTCTTGTTAGACGAGGAGCTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGGGAGAAGATCAGGCCAATACTAACAGGATTGTTGGAACTTATGGGTATATGTCTCCTGAATATGCAATGCAAGGATTATTTTCAGAGAAATCAGATGTTTTTAGCTTCGGTGTTTTGATACTAGAGATTGTTACCGGGAGAAGGAACTCGAGTTTTTATGACAATGAGCATGCTCTGAGCCTTTTAGGATCTGTGTGGATAAAATGGAGAGAAGACAATATTTTATCTCTCATAGATCAAGGAATATATGATCCTAGTCATCAAAATTACATTTTAAGGTACATACATATAGGACTTTTGTGTGTTCAAGAACTTGCTGTAGACAGGCCCACTATGGCTGCAGTAATTTCTATGCTTAACAATGAAGCTGCATTACTTCCATCTCCTAGTAAGCCTGCATTTATCCGGATGAAGAATATGTTGAATCCAAATGGACCTGAAGAATTTCAAAGTGGTAGTTCCACCAATAATGTCAGTATGACAGATATCTATGGCAGGTAG 2505 0.3844 MVFSNYAYLLSVIFILFCYLLRVSIGIDTITSSQFIKDPETLVSKDGNFTFGFFSPKNSTNRYVGIWWKSQSTVIWVANRNQALNDSNGTVAIFVDGNLVVLNGHKQVIWSSNVSNIASNTTSQFSEFGNLVLLESKTRNILWQSIEQPSDTLLPSMKLSIDKRTGKSVKLRSWKSPSDPSVGNFSASTIERQHILEVIIWNETRTFWRSGPWNGGVFTGIQAMTMAYFFGFQAGDDGEGNTVIYYTIQNDGDFFIYHLNSKGILEETRWDDTKKEVRVTWTSKDSECDVYGICGTFATCNSLSSPICSCLRGFEPRDIGEWNRKNWTGGCIRRTPLQCEGVDNKTASRKEDGFLKLQIIKVPDFAEGLTVTSDRCRNLCLKNCSCLAYSHIDGIGCLSWTENLLDIQQLQIGGLDLYVRVAYAELDRGRNMTIVIISTVIIGILIIVICAYIMWRRRSNHPAKLWHFVKSARKKNNKSFQLFNKGGSPEHYTTDNEIGELLIFDFEKLATATNNFHLSNKLGHGGFGTVYKGKLQDGQEIAVKRLSRASGQGLEEYMNEVVVICKLQHRNLVRLLGCCIEGDEKMLMYEYMPNKSLDAFIFDPSKNKLLDWKTRYNIIEGIARGLLYLHRDSRLRIIHRDLKASNVLLDEELNPKISDFGMARIFGGGEDQANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIVTGRRNSSFYDNEHALSLLGSVWIKWREDNILSLIDQGIYDPSHQNYILRYIHIGLLCVQELAVDRPTMAAVISMLNNEAALLPSPSKPAFIRMKNMLNPNGPEEFQSGSSTNNVSMTDIYGR 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01194 834 SUPERFAMILY Protein kinase-like (PK-like) 497 810 IPR011009 -
Trre13g01194 834 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 778 - -
Trre13g01194 834 CDD STKc_IRAK 522 789 - -
Trre13g01194 834 Pfam PAN-like domain 349 407 IPR003609 -
Trre13g01194 834 Gene3D Phosphorylase Kinase; domain 1 490 591 - -
Trre13g01194 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Trre13g01194 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Trre13g01194 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 484 591 - -
Trre13g01194 834 SMART blect_4 33 149 IPR001480 -
Trre13g01194 834 CDD EGF_CA 287 317 - -
Trre13g01194 834 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Trre13g01194 834 MobiDBLite consensus disorder prediction 813 834 - -
Trre13g01194 834 PIRSF SRK 1 834 IPR024171 GO:0004674
Trre13g01194 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 795 - -
Trre13g01194 834 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Trre13g01194 834 CDD PAN_AP_plant 335 422 - -
Trre13g01194 834 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre13g01194 834 Gene3D - 23 146 IPR036426 -
Trre13g01194 834 CDD B_lectin 33 149 IPR001480 -
Trre13g01194 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Trre13g01194 834 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Trre13g01194 834 Pfam Protein tyrosine and serine/threonine kinase 517 787 IPR001245 GO:0004672|GO:0006468
Trre13g01194 834 SMART serkin_6 516 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01194 834 SMART ntp_6 349 421 IPR003609 -
Trre13g01194 834 Pfam D-mannose binding lectin 73 175 IPR001480 -
Trre13g01194 834 ProSiteProfiles Protein kinase domain profile. 516 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01194 834 Gene3D Transferase(Phosphotransferase) domain 1 592 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01194 Trre-Chr13 9396840 9399961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01194 424 829 Receptor kinase-like Gene Family AT4G05200 49.140 2.72e-126 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01194 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01194 - - tpra:123892366 1513.43