Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01193 ATGGGTTTCGGTAGTTGTTCAAATCTATTTTCTGTTTTGTTCATTTTATGTTGCTATTTGTTACACTTTAGTATTGCCATAGATACCATCACATCATCCCAATTTATCAAGGACCCTGAGACTCTAATCTCCAAAGATGGTAACTTCACCTTTGGATTCTTTAGCCCTAAAAATTCTACTAGTCGTTACGTTGGAATTTGGTGGAAGTCTCAATCTACAATCATATGGGTGGCAAATAGAAACCAACCAATGAACGACTCCAATGGGACTGCCACGATATATGAAGATGGAAATCTTGTGGTATTAAATGGACAGAAACGAGTCATTTGGTCATCAAATGTTTCCAACATAGCATCCAATACAAGCTGTCAGTTTTCAGACTTTGGTAACATTGTCCTTTTGGAGAGCACAACTGGAAACATCTTATGGCAGAGTATTCAGCAACCTTCAGATACATTTCTTCCAGGCATAAAACTTTACACCAACAAAAGAACTGGCAAGAGAGTAAAACTCACATCATGGAAAAGCTCTTCTGACCCCTCTGTTGGCAACTTCTCTTTTAGTACTGTTGAACACCTAAATATACTTGAAGTGTTCATTTGGAATGAAACTCGACCATGCTGGCGCAGTGGTCCTTGGAATGGTGGGGTCTTTACTGGGATACAAACAATGAAACTCGCATATCTTAATACTTTTCAAGTTGGAGATGATGCAGAAGGAAATATTGGTATGTCTTATACAATATCAAATGAGGAGGAATTGGGGATCTATCACCTGAACTCACAAGGGAAATTAGAAGAAACAGGGTGGGATGATGAGAAGAAAGAAATGCAAGTTTCATGGACTAGCCGAATGTCGGAGTGTGATGTTTATGGAATTTGTGGGGTATTCGCTAGATGTAATTCATTGAGCTCACCGATATGCAGCTGTTTGAGAGGATTTGAACCTATGAGCATACATGAATGGACTCGTCACAACTGGACTAGTGGGTGTGTTAGGAGGACACCTTTGCAATTGCAGTGTAAAAGTGTTAACAACAAAACCACTAGTACAAAGGAAGATGGGTTTTTGAAATTGAAGATGGTTAAAGTTCCTGATTTTGCAGAAGGAACAGCTGTGACACCAGACATATGCAGAAGCTTATGCTTAGAGAATTGCTCCTGCGTCGGATATTCACATGATACTAGGATTGGCTGCATGTCTTGGACAAAGGATTTACTTGACATACAAGAACTCCAAAGTGGAGGACTTGATCTATATTTTCGTGTAGCCCACACAGAGCTTGAAAGAGGGAGAAACAAAACAATCATCATCGCAATTATGGTTACAATAGGAACTCTCATTATTGTCATCTGCACATATATCATGTGGAGAAAGACTTCAAACGACTCAGCTAAACAGTGGCACTCTACCAAATCAACAAGGAAAAATAAGAACAAAGCTTTCCGACTATTTAATAAAGGTGGAACATCACAAGTTAATACTAGTGACGGGGTAATTGGAGACCTGTCCCAGATTAAACTACAAGAGCTAATACTATTTGATTTTGGAAAGCTTGCAACTGCCACTAACAACTTCCACTTATCCAACAAGCTTGGAGAGGGTGGTTTTGGTCCAGTGTACAAGGGAAAACTACAAGATGGTCAGGAAATAGCAGTTAAGAGACTTTCTAGAGCATCTGGACAAGGCTTAGAAGAATTCATGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTACTTGGCTGCTGTATAGATGATGATGAAAAGATGTTGATGTACGAGGACATGCCAAACAGTAGTTTGGATGCATTTATCTTTGATCCATCAAAAAGTAAACTCCTAGATTGGAGAACCCGGTATACCATTATAGAAGGAATAGCTCGAGGATTGTTGTATCTTCACAGAGATTCAAGACTACGAATTATACACAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGATGAGCTGAATCCAAAAAATTCTGACTTTGGTATGGCTAGAATCTTTGGAGGTAGAGAAGATCAGGCCAATACTAACAGGGTTGTTGGAACTTATGGCTATATGTCTCCCGAATATGCAATGCAAGGACTATTTTCAGAGAAATCAGATGTTTTTAGCTTTGGTGTTTTGATACTTGAGATCGTTAGTGGGAGAAGAAATTCAAGCTTTTATGACAACGAGCATGCTCTAAGCCTTTTAGGATTTGTTTGGATACAATGGCGGGAAGGAAATATTTTATCTTTAATAGATCCAGAAATATATGATCATAGTGATCATTATTATATTTCAAGGTGCATACATATAGGGCTTTTGTGTGTACAAGAACTTGCTGTAGATAGACCTACTATGGCTGAAGTAATTTCTATGCTTATAAGTGAGGCTGCATTTCTTCCTCCTCCTAGTCAGCCTGCTTTCATCTTGAGGCAGAATATGTTGAACTCGAAGTCGCCTGATGAAAATCAAATTGTTCTATCCATCAATATGGTCAGTATTACCGACATACGTGGCAGATAG 2535 0.3878 MGFGSCSNLFSVLFILCCYLLHFSIAIDTITSSQFIKDPETLISKDGNFTFGFFSPKNSTSRYVGIWWKSQSTIIWVANRNQPMNDSNGTATIYEDGNLVVLNGQKRVIWSSNVSNIASNTSCQFSDFGNIVLLESTTGNILWQSIQQPSDTFLPGIKLYTNKRTGKRVKLTSWKSSSDPSVGNFSFSTVEHLNILEVFIWNETRPCWRSGPWNGGVFTGIQTMKLAYLNTFQVGDDAEGNIGMSYTISNEEELGIYHLNSQGKLEETGWDDEKKEMQVSWTSRMSECDVYGICGVFARCNSLSSPICSCLRGFEPMSIHEWTRHNWTSGCVRRTPLQLQCKSVNNKTTSTKEDGFLKLKMVKVPDFAEGTAVTPDICRSLCLENCSCVGYSHDTRIGCMSWTKDLLDIQELQSGGLDLYFRVAHTELERGRNKTIIIAIMVTIGTLIIVICTYIMWRKTSNDSAKQWHSTKSTRKNKNKAFRLFNKGGTSQVNTSDGVIGDLSQIKLQELILFDFGKLATATNNFHLSNKLGEGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVICKLQHRNLVRLLGCCIDDDEKMLMYEDMPNSSLDAFIFDPSKSKLLDWRTRYTIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDDELNPKNSDFGMARIFGGREDQANTNRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIVSGRRNSSFYDNEHALSLLGFVWIQWREGNILSLIDPEIYDHSDHYYISRCIHIGLLCVQELAVDRPTMAEVISMLISEAAFLPPPSQPAFILRQNMLNSKSPDENQIVLSINMVSITDIRGR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01193 844 Pfam Protein tyrosine and serine/threonine kinase 527 795 IPR001245 GO:0004672|GO:0006468
Trre13g01193 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 805 - -
Trre13g01193 844 SMART ntp_6 351 423 IPR003609 -
Trre13g01193 844 Gene3D Transferase(Phosphotransferase) domain 1 602 802 - -
Trre13g01193 844 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Trre13g01193 844 CDD B_lectin 33 145 IPR001480 -
Trre13g01193 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Trre13g01193 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Trre13g01193 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Trre13g01193 844 CDD PAN_AP_plant 338 424 - -
Trre13g01193 844 ProSiteProfiles PAN/Apple domain profile. 341 424 IPR003609 -
Trre13g01193 844 SMART blect_4 33 149 IPR001480 -
Trre13g01193 844 PIRSF SRK 3 844 IPR024171 GO:0004674
Trre13g01193 844 CDD STKc_IRAK 532 797 - -
Trre13g01193 844 Pfam D-mannose binding lectin 73 175 IPR001480 -
Trre13g01193 844 Gene3D Phosphorylase Kinase; domain 1 502 600 - -
Trre13g01193 844 SMART serkin_6 526 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01193 844 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre13g01193 844 SUPERFAMILY Protein kinase-like (PK-like) 512 830 IPR011009 -
Trre13g01193 844 FunFam receptor-like serine/threonine-protein kinase SD1-8 501 601 - -
Trre13g01193 844 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 788 - -
Trre13g01193 844 Gene3D - 23 147 IPR036426 -
Trre13g01193 844 ProSiteProfiles Protein kinase domain profile. 526 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01193 844 Pfam PAN-like domain 351 409 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01193 Trre-Chr13 9391165 9394349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01193 490 844 Receptor kinase-like Gene Family AT4G11530 53.186 2.09e-120 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01193 PK_Tyr_Ser-Thr 8.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01193 - - mtr:25498365 1334.7