Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01190 ATGAGTTTCAACTGCTGTTCAAATCTGTTCTTTATTTTGTTCATGCTGTTTTTATATTTGTTACAAGTTAGTATTTCCATAGACACCATCACATCATCTCAATTCATCAAGGACCCTGATACTCTACTCTCCAAAGATGGTAACTATTCCTTCGGATTCTTTAGCCCCGAAAATTCTACTAATCGCTATGTTGGAATTTGGTGGAAGTCTCAATCTACAAACATTTGGGTGGCAAACAGAAACCAACCACTGAATAATTCTAATGGGATTATCACAATATCCGAAGATGGAAATCTTGTTGTATTGAACGGACAGAAACAAGTCATTTGGTCATCAAATATATCAAGTACAACATCCAATACCACGTCCAAGTTTTTAGACTTTGGTAACCTTGTCCTTTTGGAGAGCACAACTAGAAACATCTTATGGCAGAGTATTCAGCATCCTTCGGATACGTTACTTCCTGGTACGAAACTTTCTATGAGCAAAACAACAGGTGAGAAAATCAGACTAAGATCATGGAAAAGCCCTTCTGATCCATCTGTTGGGAGTTTCTCTGCTAGTTTTGTTGAGCACCGAAATATAATTCAAGTGTTTATATGGAATGAAACTCAACCATACTGGCGCAGTGGTCCTTGGAATGGCCGTGTCTTAACAAGGATAGATACTATGACGGATACATATTTCAAGGGTTTTGAAGGCGGAGATGATGGAAAAGGGAATATTATTATATATTATACAATGCCAGATGGTTTGGATTTCTTAATCTATAACCTGAATTCACAAGGAAATTTAGATGAAACATTGTGGGACGATGAGAAGAAAGAATTGCAAGTTACATGGACTAGCCGAAAATCGGACTGTGATGTTTACGGTATATGTGGGGCATTTGCAAGTTGTAGTTCATTGAGCATACCGATATGCAGTTGTTTAAAAGGATTTGAACCCTATAGCATACATGAATGGAATAGAAACAACTGGACTGGTGGGTGTGTTAGGAGGACACCTTTGCAGTGCGAAAGGGTCATCAACAAAACCAAAACTACAATGAAAGATGGGTTTTTGAAATTGCAGATGGTTAAAGTACCAGATTCTGCCGAAGGCTTAGCTGTTACACCAGATATATGCCGAAGCTTATGCTTGGAGAATTGTTCTTGCACTGCGTACTCTAACGGTGCTGGGATTGGCTGTATGTCTTGGACAGGGAATTTAATTGACATAGAACATCTCCAAACCGGAGGATTTGATCTATATTTTCGCGTAGCCCATGCAGAGCTTGATAGTGGGGGAAACAAAACAATCATCGTTACAATTTCAGCGATTATAGGAACTCTCACAATTTCCATTTGTGCATATATAATGTGGAGAAGAACTTCAAAAAACTCAGCTAAACTGTGGCACTCCAAATCAACAAGAATAACGAACAACAAAGCTTTCCGACTATTTTATAAAGCTGGAACAACAGAAGTTAATACTAGTGACGATGCAATAGGAGAACTGTCCCAAGTTAAACTATATGAACTATTGCTATTTGATTTTGAAAAGCTTGCAACTGCCACAAACAACTTCGACTTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCCAGTATACAAGGGGAAACTGCAAGATGGTCAAGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGTCAAGGGCTTGAAGAATTCATGAATGAAGTTGTGGTCCTTTGTAAGCTTCAACACCGTAATCTTGTAAGACTTCTTGGCTGCTGCGTTGATGGTAATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTTATATTTGATCCATCAAAAAATAAACTCCTTGATTGGAGGACACGCTTTAGCATTATAGAAGGAATAGCTCGAGGATTGTTGTATCTTCACAGAGATTCAAGACTAAGAATTATACATAGAGATTTGAAAGTAAGTAATATCTTGTTAGATGAGCAGCTGAATCCAAAAATTTCCGACTTCGGTATGGCTAGAATCTTTGGAGGGAGAGAAGATCATGCAAACACTACCAGGGTTGTCGGAACTTATGGCTATATGTCTCCCGAATATGCGATGAAAGGACTTTTTTCAGAGAAATCGGATGTTTTTAGCTTTGGTGTTTTGATACTAGAGATCATTATTGGTAGAAGGAACTCAAGCTTTTATGACGACGAGCTTGCTCTGAATCTCTTAGGATTTGTCTGGTTTCATTGGAGGGCGGACAATATTTCATCGTTACTAGAACCAGAAATATACGATGATAATCATCATAAGAATATTTTGAGATGCATACATATAGGACTTTTATGTGTACAAGAATCCGCTGTAGACAGGCCTACTATGGCTACAATAACTGCGATGCTTAACGGCGAGGTTGCATCTCTTCCTTCTCCAAATGAACCTGCATTCATTTTGAGACAGTGTATCAATCCGCCACCTGAAGAAAATCAAAGCATAAATGAAGTCAGTATTACAGAAGTATCTGGCAGATAG 2511 0.3839 MSFNCCSNLFFILFMLFLYLLQVSISIDTITSSQFIKDPDTLLSKDGNYSFGFFSPENSTNRYVGIWWKSQSTNIWVANRNQPLNNSNGIITISEDGNLVVLNGQKQVIWSSNISSTTSNTTSKFLDFGNLVLLESTTRNILWQSIQHPSDTLLPGTKLSMSKTTGEKIRLRSWKSPSDPSVGSFSASFVEHRNIIQVFIWNETQPYWRSGPWNGRVLTRIDTMTDTYFKGFEGGDDGKGNIIIYYTMPDGLDFLIYNLNSQGNLDETLWDDEKKELQVTWTSRKSDCDVYGICGAFASCSSLSIPICSCLKGFEPYSIHEWNRNNWTGGCVRRTPLQCERVINKTKTTMKDGFLKLQMVKVPDSAEGLAVTPDICRSLCLENCSCTAYSNGAGIGCMSWTGNLIDIEHLQTGGFDLYFRVAHAELDSGGNKTIIVTISAIIGTLTISICAYIMWRRTSKNSAKLWHSKSTRITNNKAFRLFYKAGTTEVNTSDDAIGELSQVKLYELLLFDFEKLATATNNFDLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVLCKLQHRNLVRLLGCCVDGNEKMLMYEYMPNKSLDAFIFDPSKNKLLDWRTRFSIIEGIARGLLYLHRDSRLRIIHRDLKVSNILLDEQLNPKISDFGMARIFGGREDHANTTRVVGTYGYMSPEYAMKGLFSEKSDVFSFGVLILEIIIGRRNSSFYDDELALNLLGFVWFHWRADNISSLLEPEIYDDNHHKNILRCIHIGLLCVQESAVDRPTMATITAMLNGEVASLPSPNEPAFILRQCINPPPEENQSINEVSITEVSGR 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01190 836 Gene3D Phosphorylase Kinase; domain 1 486 598 - -
Trre13g01190 836 Pfam D-mannose binding lectin 73 175 IPR001480 -
Trre13g01190 836 Gene3D - 22 147 IPR036426 -
Trre13g01190 836 ProSiteProfiles Protein kinase domain profile. 523 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01190 836 CDD STKc_IRAK 529 796 - -
Trre13g01190 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Trre13g01190 836 Gene3D Transferase(Phosphotransferase) domain 1 599 802 - -
Trre13g01190 836 SMART ntp_6 349 421 IPR003609 -
Trre13g01190 836 Pfam Protein tyrosine and serine/threonine kinase 525 791 IPR001245 GO:0004672|GO:0006468
Trre13g01190 836 PIRSF SRK 1 836 IPR024171 GO:0004674
Trre13g01190 836 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Trre13g01190 836 FunFam receptor-like serine/threonine-protein kinase SD1-8 496 598 - -
Trre13g01190 836 SMART serkin_6 523 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01190 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Trre13g01190 836 Pfam PAN-like domain 349 407 IPR003609 -
Trre13g01190 836 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre13g01190 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 802 - -
Trre13g01190 836 CDD PAN_AP_plant 335 422 - -
Trre13g01190 836 SUPERFAMILY Protein kinase-like (PK-like) 510 813 IPR011009 -
Trre13g01190 836 CDD B_lectin 33 149 IPR001480 -
Trre13g01190 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Trre13g01190 836 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Trre13g01190 836 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 785 - -
Trre13g01190 836 SMART blect_4 33 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01190 Trre-Chr13 9377387 9380547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01190 429 836 Receptor kinase-like Gene Family AT4G21410 49.762 4.76e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01190 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01190 - - tpra:123892367 1478