Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01189 ATGGATTTCCGCTACTGTGCATATTTGGTCTATGTTTTGTTCATTTTGTGTTGCTATTTGTTACATGTTAGTGCTGGTATAAACGCCATCACATCATCTCAATTCATCAATGACCCTGAAACACTAATATCCAAAGATGGTACCTTCACCTTTGGATTCTTTAGCCCTATAAATTCTACAAACCGCTACGTTGGAATTTGGTGGAAATCTCAATCTACAATCATATGGGTGGCAAACAGAAACCAACCACTGAATGATTCTAATGGGATTGTCACAATATCTGAAGATGGAAACCTCGTGGTATTAAATGGACAGAAACGAGTCATTTGGTCATCAAATGTTTCCAACATAGCATCCAATAGAAGTTGTCAGTTTTCAGACTTTGGTAACCTTGTCCTGTTGGAGAGCGCAACTGGAAACATCTTATGGCAGAGTATTCAGCATCCTTCGGATACGTTGCTTCCTGGCATGAAAATTTCAGTCAACAAAAGAACAGGTCAGAGTGTAAACCTCAAATCATGGAAAAGCCTTTCTGATCCATCTGTTGGCAACTTCTCTTGTAATATTGTTGAACACCGGCATATAATTGAAGTGTTCATTTGGAATGATACTCGTCCATATTGGCGTAGTGGTCCTTGGAATGGAGGGGTCTTCACTGGGATACAGACAATGACAGTGGCATATTTTTTTGGTTTTCGAGGGGGTGATGATGGAGAAGGGAATACTAACATATATTATACAATACAAAATGATGAGGAATATTTTATCTATCACCTGAATTCGCAAGGAAAATTAGAACAAACATGGTGGGATGATGAGAAGAAAGAAATGCAAGTTACATGGACAAGCCGAGAATCCGAGTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGATGTAATTCATTGACCTCACCAATGTGTAGCTGTTTGAGAGGATTTGAACCCCGAAATATTCTAGAATGGAATTTACATAACTGGACCGGTGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCAACAATAAAACCACAAGTTCTAAGGAAGATGGCTATTTGAAACTACAGATGGTTAAAGTTCCAGATTTTGCTGAAGGTTTAGCTGTTACACCAGACATATGCAGAAGCCTATGTTTGGAGAATTGCTCTTGCCTAGCATATTCTCATGATGATGGGATTGGCTGTATGTCTTGGACTGGGAATCTACTCGACATACAACAACTCGAAAGTGGAGGACTCGATCTATATGTTCGCGTAGCATATGCAGAACTTGATCGAGGGAGAAACAAGACAATCATCATTGTAAGTACAGTGATTGTTGGAACTCTCATAGTTGTCATTTTTGCATATATAATCTGGAGAAGGACATCAAACCACCCAGCTAAACTGTGGCTTTTTACTAAATCAGCAAGGAAAAAGAACAACAAAGCTTTCCAACGTTTTAATAAAGGCGGATCACCAGAAGGATATGCTAGTGACAATGTAATAGGAGAAATGTCCCAAGTTAAACTACAAGAGCTATTAATATTTGATTTTGAAAAGCTTGCAACTGCCACAAATAACTTCCACTTATCCAACAAACTTGGACAGGGTGGTTTTGGTCCCGTATACAAGGGGAAACTACAAGATGGTCGGGAAATAGCTGTTAAAAGACTCTCTAGAGCTTCTGGACAAGGGCTGGAGGAATTCATGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGTTGCTGTATCGAAGGTGATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATGCATTCATCTTTGATCCAATAAAAAATAAACTCCTAGACTGGAGGACACGGTATAGCATAATAGAAGGAATAGCTCGAGGATTGCTATATCTTCACAGAGATTCTAGACTAAGAATTATTCACAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGACGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGGGAGAAGATCAGGCCAATACTAACAGGATTGTTGGAACTTATGGCTATATGTCTCCTGAATATGCAATGCAAGGGTTATTTTCAGAGAAGTCAGATGTTTTTAGCTTTGGTGTATTGATACTAGAGATTGTTACCGGGAGAAGGAACTCAAGTTTTTATGACAAAGAGCATGCTATGAGCCTTTTAGGATCTGTTTGGATAAAATGGCGGGAAGATAATATTTTATCTCTCATAGATCAAGGAATATATGATCCTAGTCATCATAATTACATTTTAAGTGAAACTGCATTAATTCCTCCTCCTAGTAAGCCTGCATTTGTCCTGATGAAGAATATGTTGAATCCAAATGGGCTTGAAGAATGTCAAAGTGGTAGTTCCATTAATAATATCAGTATTACAGATATCTATGGCAGATAG 2445 0.3853 MDFRYCAYLVYVLFILCCYLLHVSAGINAITSSQFINDPETLISKDGTFTFGFFSPINSTNRYVGIWWKSQSTIIWVANRNQPLNDSNGIVTISEDGNLVVLNGQKRVIWSSNVSNIASNRSCQFSDFGNLVLLESATGNILWQSIQHPSDTLLPGMKISVNKRTGQSVNLKSWKSLSDPSVGNFSCNIVEHRHIIEVFIWNDTRPYWRSGPWNGGVFTGIQTMTVAYFFGFRGGDDGEGNTNIYYTIQNDEEYFIYHLNSQGKLEQTWWDDEKKEMQVTWTSRESECDVYGICGAFARCNSLTSPMCSCLRGFEPRNILEWNLHNWTGGCVRRTPLQCERVNNKTTSSKEDGYLKLQMVKVPDFAEGLAVTPDICRSLCLENCSCLAYSHDDGIGCMSWTGNLLDIQQLESGGLDLYVRVAYAELDRGRNKTIIIVSTVIVGTLIVVIFAYIIWRRTSNHPAKLWLFTKSARKKNNKAFQRFNKGGSPEGYASDNVIGEMSQVKLQELLIFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGREIAVKRLSRASGQGLEEFMNEVVVICKLQHRNLVRLLGCCIEGDEKMLMYEYMPNKSLDAFIFDPIKNKLLDWRTRYSIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDDELNPKISDFGMARIFGGGEDQANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIVTGRRNSSFYDKEHAMSLLGSVWIKWREDNILSLIDQGIYDPSHHNYILSETALIPPPSKPAFVLMKNMLNPNGLEECQSGSSINNISITDIYGR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01189 814 PIRSF SRK 1 770 IPR024171 GO:0004674
Trre13g01189 814 Pfam PAN-like domain 349 407 IPR003609 -
Trre13g01189 814 SMART serkin_6 524 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01189 814 Pfam Protein tyrosine and serine/threonine kinase 525 731 IPR001245 GO:0004672|GO:0006468
Trre13g01189 814 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Trre13g01189 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Trre13g01189 814 Gene3D Phosphorylase Kinase; domain 1 497 599 - -
Trre13g01189 814 Gene3D - 22 147 IPR036426 -
Trre13g01189 814 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Trre13g01189 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Trre13g01189 814 SUPERFAMILY Protein kinase-like (PK-like) 507 760 IPR011009 -
Trre13g01189 814 FunFam receptor-like serine/threonine-protein kinase SD1-8 498 599 - -
Trre13g01189 814 CDD PAN_AP_plant 335 422 - -
Trre13g01189 814 SMART ntp_6 349 421 IPR003609 -
Trre13g01189 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 742 - -
Trre13g01189 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Trre13g01189 814 CDD B_lectin 33 149 IPR001480 -
Trre13g01189 814 Gene3D Transferase(Phosphotransferase) domain 1 600 797 - -
Trre13g01189 814 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre13g01189 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 773 - -
Trre13g01189 814 Pfam D-mannose binding lectin 73 175 IPR001480 -
Trre13g01189 814 ProSiteProfiles Protein kinase domain profile. 524 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01189 814 SMART blect_4 33 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01189 Trre-Chr13 9370970 9374222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01189 424 814 Receptor kinase-like Gene Family AT4G05200 45.221 2.59e-109 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01189 PK_Tyr_Ser-Thr 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01189 - - tpra:123892366 1362.82