Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01188 ATGGGTTTCAGCTGCTGTTCAAATCTGTTCTCTGTTTGGTTTATTCTGTTTTTCTATCTGTTACAGGTTAGTATTGCCATAGACACCATCACATCATCTCAATTCATCAAGGACCCTGATACCCTACTCTCCAAAGATGGTAACTATGCCTTGGGATTCTTTAGCCCTGAAAATTCTACAAATCGCTACGTTGGAATTTGGTGGAAGTCTCAATCCACAAACATATGGGTGGCAAACAGAAATCAACCACTGAATGATTCTAATGGGATTGTCACAATATCTGAAGATGGAAATCTTGTGGTATTGAACGGACATAAACAAGTCATTTGGTCATCGAATGTATCCAGTAGAGCATCCAATACCACGTCCAAGTTTTCAGACGATGGTAACCTTGTCCTTTTGGAGAGCACAACTGAAAACATCTTATGGCAGAGTATTCAGAAACCTTCGGATACATTACTTCCTGGTATGAAACTTTCTCTCAACAAAAGAACCGGTGAGAAAATCAGACTAAGATCATGGAAAAGCCCTTCTGATCCATCTGATGGGAGTTTCTCTTCTAGTATTGTTGAACGCCGAAATATACTTGAAGTGTTTATTTGGAATGAAACTCGACCATACTGGCGGAGTGGTCCTTGGAATGGTGGGGTCTTTACAGGGATAGATACTATGGTAGCTGCATATTATAATGGTTTTCAAGGTGGAGATGATGGAGAAGGGAATATTAATATATATTATACAATCCCTGATGGTAAGGTTTTCTTGATCTATAACCTGAATTCACAAGGAATTTTAGATGAAAAATCGTGGGATGAGGAAAAGAAAGAAGTGCAAGTTACATGGACTAGCCGAAAATCGGAGTGTGACGTTTATGGTATATGTGGGGCATTTGCAAGTTGTAGTTCATTGAGCTCACCAATATGCAGTTGTTTGAAAGGATTTGAACCTAGAAGCATACAAGAATGGAATAGAAACAACTGGACTGGTGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAAAGTCATCAACAAAACCACAACTACAAAGAAAGATGGGTTTCTGAAATTGCACGCGGTTAAAGTTCCAGATTTTGCAGAAGCTGTAGCTGTGACACCAGATATATGCCGAAACTTATGCTTGGAGAATTGTTCTTGCACTGCGTACTCTAATGATGATGGGATTGGCTGTATGTCTTGGACAGGGAATTTGATTGATATAGAACAGCTCCAACTTGGAGGACTTGATCTATATTTTCGCGTTGCCCATGCAGACCTTGATAGAGGAGGAAACAAAACAATCATCATTACAATATCAGTGATAATATTAATAGGAACTCTCACAATTTCCATTTGTGCATATATCATGTGGAGAAGGAACTCAGCTAAACTGTGGCACTCTATCAAATCAACAAGGATAACAAACAACAAAGCTTTTCGACTATTTTATAAAGGTGGAACATCAGAAGTTCATACTTGTGACAATGTAATTGGAGAACTGTCCCAAGTTAAACTACAAGAGCTATTACTATTTGATTTTGAAAAGCTTGCAACTGCCACAAACAACTTCCACTTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCCAGTATACAAGGGGAAACTGCAAGATGGTCAAGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGCCAAGGGCTTGAGGAATTCACGAATGAAGTTGTGGTCCTTTGTAAGCTTCAACACCGTAATCTTGTAAGACTTCTTGGCTGCTGTGTTGACGGGGATGAAAAGATGTTGATGTATGAGTACATGCCAAACAAAAGTTTGGATACATTTATATTTGATCCATCAAAAAATAAACTTCTAGATTGGGGGACACGAATCTTTGGAGGGAGAGAAGATCATGCAAATACTAATAGGGTTGTCGGAACTTATGGCTATATGTCTCCCGAATACGCGATGCAAGGGCATTTTTCAGAGAAATCAGATGTTTTTAGCTTTGGTGTTTTGATACTAGAGATCATGACTGGTAGAAGGAACTCAAGTTGTTGTGACAATGAGCATGCTCTGACTCTTTTAGGATTTGTCTGGATTCAATGGAGGGAAGACAATGTTTTATCGTTCATAGATCCAGAAATATATGTAATTTCGATGCTTAATAGTGAGGTTGCATCTCTTCCTCCTCCAAATGAACCTGCATTTATCTTTAGGCAGAATATGTATTCAAAGTCGCCCGAAGAAAATGAAAGCATTAACAATGTCAGCATTACAGATGTATATGGCAGATAG 2274 0.3901 MGFSCCSNLFSVWFILFFYLLQVSIAIDTITSSQFIKDPDTLLSKDGNYALGFFSPENSTNRYVGIWWKSQSTNIWVANRNQPLNDSNGIVTISEDGNLVVLNGHKQVIWSSNVSSRASNTTSKFSDDGNLVLLESTTENILWQSIQKPSDTLLPGMKLSLNKRTGEKIRLRSWKSPSDPSDGSFSSSIVERRNILEVFIWNETRPYWRSGPWNGGVFTGIDTMVAAYYNGFQGGDDGEGNINIYYTIPDGKVFLIYNLNSQGILDEKSWDEEKKEVQVTWTSRKSECDVYGICGAFASCSSLSSPICSCLKGFEPRSIQEWNRNNWTGGCVRRTPLQCEKVINKTTTTKKDGFLKLHAVKVPDFAEAVAVTPDICRNLCLENCSCTAYSNDDGIGCMSWTGNLIDIEQLQLGGLDLYFRVAHADLDRGGNKTIIITISVIILIGTLTISICAYIMWRRNSAKLWHSIKSTRITNNKAFRLFYKGGTSEVHTCDNVIGELSQVKLQELLLFDFEKLATATNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFTNEVVVLCKLQHRNLVRLLGCCVDGDEKMLMYEYMPNKSLDTFIFDPSKNKLLDWGTRIFGGREDHANTNRVVGTYGYMSPEYAMQGHFSEKSDVFSFGVLILEIMTGRRNSSCCDNEHALTLLGFVWIQWREDNVLSFIDPEIYVISMLNSEVASLPPPNEPAFIFRQNMYSKSPEENESINNVSITDVYGR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01188 757 Pfam PAN-like domain 348 407 IPR003609 -
Trre13g01188 757 Gene3D - 22 147 IPR036426 -
Trre13g01188 757 PIRSF SRK 621 709 IPR024171 GO:0004674
Trre13g01188 757 PIRSF SRK 2 624 IPR024171 GO:0004674
Trre13g01188 757 PIRSF SRK 708 757 IPR024171 GO:0004674
Trre13g01188 757 CDD B_lectin 33 145 IPR001480 -
Trre13g01188 757 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Trre13g01188 757 ProSiteProfiles Protein kinase domain profile. 523 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01188 757 CDD PAN_AP_plant 335 422 - -
Trre13g01188 757 SMART blect_4 33 149 IPR001480 -
Trre13g01188 757 SUPERFAMILY Protein kinase-like (PK-like) 502 689 IPR011009 -
Trre13g01188 757 Pfam D-mannose binding lectin 73 175 IPR001480 -
Trre13g01188 757 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Trre13g01188 757 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Trre13g01188 757 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre13g01188 757 SMART ntp_6 349 421 IPR003609 -
Trre13g01188 757 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 686 - -
Trre13g01188 757 Gene3D Phosphorylase Kinase; domain 1 487 598 - -
Trre13g01188 757 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Trre13g01188 757 FunFam receptor-like serine/threonine-protein kinase SD1-8 497 598 - -
Trre13g01188 757 Gene3D Transferase(Phosphotransferase) domain 1 602 749 - -
Trre13g01188 757 Pfam Protein tyrosine and serine/threonine kinase 524 615 IPR001245 GO:0004672|GO:0006468
Trre13g01188 757 Pfam Protein tyrosine and serine/threonine kinase 638 685 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01188 Trre-Chr13 9366516 9369711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01188 428 757 Receptor kinase-like Gene Family AT4G21410 37.799 2.26e-71 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01188 S_locus_glycop 4.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01188 - - tpra:123892367 1202.19