Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01187 ATGGCTTTAAGCAAGTACAAAAATTTGATCTCACTTTTCAGTTTCATCACATTATTACTATGTTGTTCTTCATCATACGTTGTTGCAACAAACACAACATCATCATCACAAATCATCAAAGACTCAGAAACTCTAACATCAAACAGTGGGAATTTCACCTTAGGATTCTTCACCCCTCAAAATTCCACAAACCGTTATGTAGGAATTTGGTGCAAAACTCAACAATTTGTTATATGGGTTGCTAATAAAAATCAACCATTGATCAATGATTCTTTAGGAGTTCTTACAATATCTAATGATGGCAATCTTGTTGTATTGAATGGACAAAAGAATGTTGTTTGGTCAACAAATGTTTCTAATGTTACATTAGAAACCAATTCTAGTTTCACACTTTCAGATTATGGAAACCTTGTTTTGATGGATACAATAACAGGAAATACTATATGGGAGAGTTTCAATGATCCTTCAAATGCATTGTTACCAACCATGAAATTTACAAGTAATATGAACCTCACATCATGGAGAAACCCTTTTGATCCGTCCGTCGGAAGCTTCTCTTTTAGCATCGAACGGTTGAAGATTCCGGAAGTTTTTGTTTGGAATGAAACTCGGCCATATTGGCGAAGTGGTCCGTGGAATGGTCAAGTATTTATTGGAATACAAGACATGGGAACGTGGTATCTTAACGGTTTTCATTTTGAGAAAGATAGTACGAGAGGAACTGTTGATTTGTATTTCAGAGTAGATGACTTTGGACTAGTGATTTATGCGTTGAATTCGCAAGGTCGACTTAGTGAAAATTCTTGGAGTATCGAAAAGGAGGAATGGATTGTTACATGGAAAAATCAAAGATCGGATTGTGATGTTTATGGTTTTTGTGGTCCATTTGGAATTTGTAATTCAAAAGGGTCACCAATTTGTAACTGTTTAGAAGGGTTTGAACCAAGAAACAAACAAGAATGGAATAAAAAAAATTGGACTAATGGATGTGTTAGGAAGACACTTTTGCAATGTGAGATTACCAAAAATCAAAACAAGAGTAAAAATGGTAATGAACCAGATGGTTTTTTGGAATTGAATAATGTAAAAGTACCTGATTTTGCAGAATTGTCATTGGTTGAACAAGATGAATGCAAAAACCAATGTTTGATGAATTGCTCTTGCAATGCATATTCATATGCTACTGATATTGGTTGTATGTCTTGGAATGGTAATCTAATTGATATACAACAATTCCAAACCAGAGGAACCGATCTATACATTCGTGTACCCTATGCCGAACTTGGCATATCAGATAAAGGGCATAAACGAACAATTGTCATCACAATTTCGGTATTAACAGGAATTATCATAATTGTGATCATTGCTGCATATTTCATTTGCATAAATGCTTCAAACCCTGTGAGAAAAAAGAAAAACAGAATTTTTCAATTCAACAAAATTGAAAAACCTGAAGAATACACTAACAATGCAATTGGAGAATTGTCACAAGAGAAGCTACAAGAGTTATTACTATATAGTTTTGAAAAGCTCGCAACTGCTACAAATAACTTCGACTTATCCAACAAACTCGGACAGGGAGGTTTTGGTCCTGTATACAAGGGAATATTGCAAGATGGTAAGGAAATAGCGGTTAAAAGACTTTCTAGATCGTCTGGACAAGGGCTAGAAGAATTCATGAATGAAGTAGTTGTGATTTCTAAGCTTCAGCATCGCAATCTTGTAAGACTTTTAGGCTGCTGTATTGAAGGAGACGAAAAGATGTTGATGTATGAGTACATGCCGAATAGAAGTTTGGATGCATATGTTTTTGATCCGTTGAGAAATAAACTCCTGGATTGGGAAAAACGCTTCAACATTATAGAAGGAATAGCTCGTGGATTGCTTTATCTACACAGGGATTCTAGGCTTAAAATCATACACAGAGATTTGAAGGCGAGTAATATCTTGTTGGATGAGGAGCTGAATCCTAAAATATCGGACTTTGGTATGGCCAGAATCTTTAAAGTGAGTGAAGATCATGCTAATACACAAAGAGTTGTCGGAACATATGGTTATATGGCTCCCGAATATGCAATGCAAGGAGTATTTTCAGATAAATCAGACGTCTTTAGCTTTGGAGTTTTGCTAATAGAGATTGTTTGTGGAAGAAGAAACTCAAGCTTTATTGAAAGTGAAAATGCTATGACTCTCCTAGGAATTGCTTGGATTCAATGGAGGGAAGACAATATTTTAAGTTTAATAGAACCAGAAATATATGATCATTGTCATCAAAAGAATATTTTGAGGTGCATACATATAGGACTTCTATGTGTACAAGAATCAGCTGCAGATAGACCTACTATGGCTGCAGTGGTTTCTATGCTTAACAGTGAAATTATGGACATTCCACCTGCAAGACAACCTGCATTCCTCTTGATGCAGAATATGATGAATACAGTCTCTTCTGATGAAAGAATTGAATTGTATTCTAATAATGGTTTGAGTATCACAAACATTCATGGAAGATAG 2511 0.3524 MALSKYKNLISLFSFITLLLCCSSSYVVATNTTSSSQIIKDSETLTSNSGNFTLGFFTPQNSTNRYVGIWCKTQQFVIWVANKNQPLINDSLGVLTISNDGNLVVLNGQKNVVWSTNVSNVTLETNSSFTLSDYGNLVLMDTITGNTIWESFNDPSNALLPTMKFTSNMNLTSWRNPFDPSVGSFSFSIERLKIPEVFVWNETRPYWRSGPWNGQVFIGIQDMGTWYLNGFHFEKDSTRGTVDLYFRVDDFGLVIYALNSQGRLSENSWSIEKEEWIVTWKNQRSDCDVYGFCGPFGICNSKGSPICNCLEGFEPRNKQEWNKKNWTNGCVRKTLLQCEITKNQNKSKNGNEPDGFLELNNVKVPDFAELSLVEQDECKNQCLMNCSCNAYSYATDIGCMSWNGNLIDIQQFQTRGTDLYIRVPYAELGISDKGHKRTIVITISVLTGIIIIVIIAAYFICINASNPVRKKKNRIFQFNKIEKPEEYTNNAIGELSQEKLQELLLYSFEKLATATNNFDLSNKLGQGGFGPVYKGILQDGKEIAVKRLSRSSGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEGDEKMLMYEYMPNRSLDAYVFDPLRNKLLDWEKRFNIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFKVSEDHANTQRVVGTYGYMAPEYAMQGVFSDKSDVFSFGVLLIEIVCGRRNSSFIESENAMTLLGIAWIQWREDNILSLIEPEIYDHCHQKNILRCIHIGLLCVQESAADRPTMAAVVSMLNSEIMDIPPARQPAFLLMQNMMNTVSSDERIELYSNNGLSITNIHGR 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01187 836 CDD STKc_IRAK 524 790 - -
Trre13g01187 836 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Trre13g01187 836 PIRSF SRK 3 836 IPR024171 GO:0004674
Trre13g01187 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 214 IPR036426 -
Trre13g01187 836 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Trre13g01187 836 ProSiteProfiles Protein kinase domain profile. 518 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01187 836 ProSiteProfiles PAN/Apple domain profile. 338 424 IPR003609 -
Trre13g01187 836 Gene3D - 25 153 IPR036426 -
Trre13g01187 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Trre13g01187 836 Pfam PAN-like domain 352 409 IPR003609 -
Trre13g01187 836 Pfam Protein tyrosine and serine/threonine kinase 520 789 IPR001245 GO:0004672|GO:0006468
Trre13g01187 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 594 797 - -
Trre13g01187 836 SMART ntp_6 351 423 IPR003609 -
Trre13g01187 836 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 780 - -
Trre13g01187 836 SMART blect_4 36 155 IPR001480 -
Trre13g01187 836 SUPERFAMILY Protein kinase-like (PK-like) 506 817 IPR011009 -
Trre13g01187 836 CDD B_lectin 36 155 IPR001480 -
Trre13g01187 836 SMART serkin_6 518 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01187 836 Gene3D Transferase(Phosphotransferase) domain 1 594 796 - -
Trre13g01187 836 Gene3D Phosphorylase Kinase; domain 1 479 593 - -
Trre13g01187 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 152 - -
Trre13g01187 836 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 482 593 - -
Trre13g01187 836 Pfam D-mannose binding lectin 77 170 IPR001480 -
Trre13g01187 836 CDD PAN_AP_plant 348 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01187 Trre-Chr13 9359627 9362979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01187 504 806 Receptor kinase-like Gene Family AT4G23140 58.900 4.09e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01187 PK_Tyr_Ser-Thr 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01187 - - gmx:100777856 1018.07