Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01184 ATGAGTTTTAGCATGTGCAATAGTTTAATCTTACTTTTCAAGTTCATCACATTAATACTATGTTGTTCTTCATCACACGTTGTTGCAACAAACACAACATCATCATCACAAATCATCAAAGACTCCGAAACTCTAACATCAAATAGTGGAAATTTCACCTTAGGATTCTTCACCCTTCAAAATTCCACAAACCGTTATGTTGGAATTTGGTGCAAAACTCAACAATTTGTTATATGGGTTGCTAATAGAAATCAACCATTGATCAATGATTCTTTAGGTGTTCTTACAATATCAAATGATGGCAATCAGCTTGTTGTATTGAATGGACAAAAAAAAGTTATTTGGTCATCAAATGTGTCCGATGTTTCAACCAAAACCAATTCTAGTTTCACACTTTTAGATTATGGAAACCTTGTTTTGATGGATACAACAACAAGAAATACTATATGGGAGAGTTTCAAGCATCCTTCAAATGCATTATTTCCAACCATGAAATATACAAGTAACATGAAACTCACATCATGGAGAACTCCTTTTGATCCGTCCATCGGAAACTTCTCTTTAAGCATCGAACGGGTGAAGATTCCAGAAATTTTCATTCGAAATGAAACTCGTCCGTATTGGAGAAGTGGTCCATGGAACAATCAAATCTTTACGGGGATAGAGGACATGAGAAATCCTTATCTTAATGGTTTTCATTTAGAGAAAGATAGTACGGGAGGAGCTGTTGATTTATACTTCCGAACAGACGACTATGGACTCATTATCTATGTCCTCAATTCGACAGGTCAAATGCATGAATGGTCTTGGAATATCGAGAAGGAGGAATGGGAGGATACATGGACTAGTCAAAGATCGAATTGCGATGTTTATGGTTTTTGTGGTCCATTTGGAATTTGTAATTCAACAAGGTCACCAATTTGTAGATGTTTGGAAGGGTTTGAACCAAGAAACAAACAAGAGTGGAATCAACAAAATTGGATTAATGGATGTGTTAGGAAGACACTTTTGCAATGTGAGATTGTCAAAAATCAAAACAAGAGTTCAAATGGTAATGAACCAGATGGTTTTTTGAAATTGAATAATGTAAAAGTGCCTGATTTTGCAGAATTGTCATCTGTTGAACAAGATGCATGCAAAAATCAGTGTTTGATGAATTGCTCTTGCACTGCATATTTATATGATGCTGATATTGGTTGTATGTCTTGGAATGGAAATCTAATTGATATACAACAATTCCAAAATGGAGGAACCAATCTATACATTCGTGTACCCTATGCCGAACTTGATATAACATCAGATAACGGGCACAAACGAACAATCATCATTACAATTTCAGTATTAATAGGAACTGTCATAGTTGTCATTGCTGCATATTTTATTTGGATAAAGGCTTCAAAGCCAGTGAGTAATAAGAAGCGTAGACTTTTTCACTTCAACAAAATAGAAAAAGCTGAAGAATACACTGACAATGTAATTGGAGAATTGTCACAAGCTAAGCTACAAGAGCTGTTACTATATAATTTTGAAAAGCTTGCAACTGCTACGAACAACTTCCATGAATCCAACAAACTTGGACAGGGAGGTTTTGGTCCTGTATACAAGGGAATACTGCAAGATGGTAAGGAAATAGCGGTTAAAAGACTTTCTAGATCGTCTGGACAAGGGTTAGAAGAATTCGTGAATGAAGTAGTAGTGATTTCTAAGCTTCAGCACCGCAATCTTGTAAGGCTTTTAGGTTGCTGTATTGAAAGAGACGAAAAGATGTTGATGTATGAGTTCATGCCAAATAAAAGTTTGAATGCATATATTTTTGATCCATCAAGAAATAAACTCTTGGATTGGGAAAAACGCTTCAACATAATTGAAGGAATCGCTCGCGGAATACTTTACCTACATAGAGATTCCAGGCTAAAAATTATACATAGAGATTTGAAGGCGAGTAACATCTTGCTAGATGAGGACCTGAATCCAAAGATATCTGACTTTGGTATGGCTAGAATCTTTGGAGTGAGTGAAGATCGCGCCAATACACAAAGGGTTGTTGGAACGTATGGTTATATGGCTCCAGAATATGCAATACATGGAGTATTTTCAGATAAATCAGATGTCTTCAGCTTTGGAGTTTTGCTAATCGAGATTGTTAGTGGAAGACGAAACTCAAGCTTTAATGAAAGTGAAAATTCTCTTACTCTCTTAGGATTTGCCTGGATTCAATGGAAGGAAGATAATATTTTAGGTTTAATAGAACCAGAAATATATGATGATAGTCATCATAAGAATATTTTGAGGTTCATACATATAGGACTTCTATGTGTACAAGAATCAGCTGCAGACAGACCTACTATGGCTGCAGTGATTTCTATGCTTAACAGTGAAACTACGGACATTCCACCTGCAAGAGAACCTGCATTCCTATTGAGGCAGAACATGATGAAAACAGTCTCTTCTGAAGAAAGAGTTGAATTGTATTCCAATAATGGTTTGAGTATCACAGACATTCATGGAAGATAG 2514 0.3584 MSFSMCNSLILLFKFITLILCCSSSHVVATNTTSSSQIIKDSETLTSNSGNFTLGFFTLQNSTNRYVGIWCKTQQFVIWVANRNQPLINDSLGVLTISNDGNQLVVLNGQKKVIWSSNVSDVSTKTNSSFTLLDYGNLVLMDTTTRNTIWESFKHPSNALFPTMKYTSNMKLTSWRTPFDPSIGNFSLSIERVKIPEIFIRNETRPYWRSGPWNNQIFTGIEDMRNPYLNGFHLEKDSTGGAVDLYFRTDDYGLIIYVLNSTGQMHEWSWNIEKEEWEDTWTSQRSNCDVYGFCGPFGICNSTRSPICRCLEGFEPRNKQEWNQQNWINGCVRKTLLQCEIVKNQNKSSNGNEPDGFLKLNNVKVPDFAELSSVEQDACKNQCLMNCSCTAYLYDADIGCMSWNGNLIDIQQFQNGGTNLYIRVPYAELDITSDNGHKRTIIITISVLIGTVIVVIAAYFIWIKASKPVSNKKRRLFHFNKIEKAEEYTDNVIGELSQAKLQELLLYNFEKLATATNNFHESNKLGQGGFGPVYKGILQDGKEIAVKRLSRSSGQGLEEFVNEVVVISKLQHRNLVRLLGCCIERDEKMLMYEFMPNKSLNAYIFDPSRNKLLDWEKRFNIIEGIARGILYLHRDSRLKIIHRDLKASNILLDEDLNPKISDFGMARIFGVSEDRANTQRVVGTYGYMAPEYAIHGVFSDKSDVFSFGVLLIEIVSGRRNSSFNESENSLTLLGFAWIQWKEDNILGLIEPEIYDDSHHKNILRFIHIGLLCVQESAADRPTMAAVISMLNSETTDIPPAREPAFLLRQNMMKTVSSEERVELYSNNGLSITDIHGR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01184 837 SUPERFAMILY Protein kinase-like (PK-like) 504 821 IPR011009 -
Trre13g01184 837 SMART serkin_6 519 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01184 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Trre13g01184 837 Pfam Protein tyrosine and serine/threonine kinase 522 790 IPR001245 GO:0004672|GO:0006468
Trre13g01184 837 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre13g01184 837 ProSiteProfiles PAN/Apple domain profile. 339 425 IPR003609 -
Trre13g01184 837 Gene3D Transferase(Phosphotransferase) domain 1 595 799 - -
Trre13g01184 837 CDD PAN_AP_plant 349 425 - -
Trre13g01184 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 595 798 - -
Trre13g01184 837 Pfam D-mannose binding lectin 77 171 IPR001480 -
Trre13g01184 837 SMART blect_4 36 156 IPR001480 -
Trre13g01184 837 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
Trre13g01184 837 Pfam PAN-like domain 353 410 IPR003609 -
Trre13g01184 837 ProSiteProfiles Protein kinase domain profile. 519 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01184 837 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 781 - -
Trre13g01184 837 Gene3D Phosphorylase Kinase; domain 1 492 594 - -
Trre13g01184 837 CDD STKc_IRAK 525 791 - -
Trre13g01184 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 153 - -
Trre13g01184 837 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 594 - -
Trre13g01184 837 SMART ntp_6 352 424 IPR003609 -
Trre13g01184 837 CDD B_lectin 36 156 IPR001480 -
Trre13g01184 837 Gene3D - 25 154 IPR036426 -
Trre13g01184 837 PIRSF SRK 2 837 IPR024171 GO:0004674
Trre13g01184 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 214 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01184 Trre-Chr13 9328629 9332279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01184 505 837 Receptor kinase-like Gene Family AT4G23140 55.233 3.47e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre13g01184 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01184 - - gmx:100779455 1013.45