Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01157 ATGAGAGAGAATGTAGAGAGAAGTGAGAGCGCCAGGGCTTCAGGGAGCAAGAAGGGTTATCTCCAACATCTTGATTCGATAACTACTTCTTTCTTCTTCACAAATCTCCTTGAAGATACCTCTACAGCAGACTTATGGAAACTCTTTTTGAAGTTTGGGAGGGTGAGAGAGGTGTATATCCCTAAGAAGCTTGACAAAAGGGGTAGGAGGTTTGGTTTTGTGAAATATATGGAGGTGGCTGAAATGGAGACTTTGGAGGAAAGTTTGAGGGAAGTATGGATTGGCTCTTTCAAACTCCAAATTAATCGCTCACGATTTGGTAGGAATGAGAGCAAGGTGGTTCCTTCACAGGATAATTCTGAGGAGAGGTCAGGTGTGAAGGTCAAGGAGGTGGTTGGATGA 402 0.4378 MRENVERSESARASGSKKGYLQHLDSITTSFFFTNLLEDTSTADLWKLFLKFGRVREVYIPKKLDKRGRRFGFVKYMEVAEMETLEESLREVWIGSFKLQINRSRFGRNESKVVPSQDNSEERSGVKVKEVVG 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01157 133 SUPERFAMILY RNA-binding domain, RBD 22 110 IPR035979 GO:0003676
Trre13g01157 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 96 IPR000504 GO:0003723
Trre13g01157 133 SMART rrm1_1 30 102 IPR000504 GO:0003723
Trre13g01157 133 MobiDBLite consensus disorder prediction 109 133 - -
Trre13g01157 133 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 28 116 - -
Trre13g01157 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
Trre13g01157 133 Gene3D - 2 123 IPR012677 -
Trre13g01157 133 CDD RRM_SF 32 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01157 Trre-Chr13 9102400 9102801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01157 27 105 Eukaryotic Initiation Factors Gene Family AT1G34140 29.114 1.88e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01157 - K13126 ccaj:109790171 89.3521