Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01121 ATGGCTTCTTACTATGGAAGGCCTGTCGCAAATTTAGGTAGGCATATTGTGTATCCAGCAACCTTCACTACTGTTCTTATCCCAGGCCAGTTTTATGGAGAAGTGCCTCATGATTTTTGTGCTCGATCATACAATGAGCTAGGACGAGTTTGGCATCTGTATGATACTAACGGGCTCAAAAAAACTTTGGCTTTCAACAAACATCATAGAATCCCTTTTTTATACAACGGCTGGTTTGCCTTACTACAACATTATCATATCGACCATGCTACAGAAATCAGCTTTGCCTATTTTGGTAATGGATCATTCCTAATAACGCTCGGGCGAGTTTACACTTCCACTGATGAATACCCTTCATTCCATAGTTACTCCACCCAACCAGTTCTTACTACGTACTTCGATCTCACTCTGACAACCTATGAAGCTACTAGCTCACAATTGACATTACAAAAGGAATTTGGTGACTATGTAAGATCAACACAGTCCGACAATGTTCTGCTATGTAGCCAACATCTTGAAGTAGTTCCTTCCATCATCCTCATTAGGAATTCTCCAAAAGCTACTACAAAGTTAGGAAGCGGGTGGAGAGAGTTTTGCAAAATACAACGACTCAAAGCTGGTGACACTATCAGATTTAAATTTGCACCAACTCCTACCTCCAACTTGGCTCATATTCGGAAGATTTAA 687 0.4061 MASYYGRPVANLGRHIVYPATFTTVLIPGQFYGEVPHDFCARSYNELGRVWHLYDTNGLKKTLAFNKHHRIPFLYNGWFALLQHYHIDHATEISFAYFGNGSFLITLGRVYTSTDEYPSFHSYSTQPVLTTYFDLTLTTYEATSSQLTLQKEFGDYVRSTQSDNVLLCSQHLEVVPSIILIRNSPKATTKLGSGWREFCKIQRLKAGDTIRFKFAPTPTSNLAHIRKI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01121 228 ProSiteProfiles B3 DNA-binding domain profile. 132 228 IPR003340 GO:0003677
Trre13g01121 228 SMART B3_2 132 228 IPR003340 GO:0003677
Trre13g01121 228 SUPERFAMILY DNA-binding pseudobarrel domain 131 215 IPR015300 -
Trre13g01121 228 Pfam B3 DNA binding domain 136 215 IPR003340 GO:0003677
Trre13g01121 228 Gene3D - 129 226 IPR015300 -
Trre13g01121 228 SUPERFAMILY DNA-binding pseudobarrel domain 22 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01121 Trre-Chr13 8885933 8886827 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g01121 B3 1.8e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01121 - K02605 tpra:123884217 177.563