Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01120 ATGTGGACTGTGTTTAAGGCAGATACTGCAGACCACATTCAACTGTTGCTCAGGGACAAAGAGGGGGACACTATCCAAGCTACTGTGATGGGTGGAGAAATGGAGACTTGGAAACCAATGTTGACGGAAGGAAAGACATACTACATGCGCAACTTTCGAGTGTTTGATAACACTTCCGACTACAAGGTCACTACACACAAATTTCGCTTGACCTTTGTCAACGCTACACGAGTTCAGCCAGTTGACATCGCTGGAATTCCAAATACCATGTTCAAATTCAAGGATTTTGCTGAAATTCTCGCCGGAAACTACAAACCAGACTACTTAGTTGACGCTATTGGAGTCGTTCATGACATCCGGAAGGTTGTTACTGGCATGCCTGGTAGGAAATCAAACGTCACCTTTACTATCAAGGATCTGAGTGATACCGTTATGGATTGCACACTATGGGATACTCTGTCGGTTGAATTTATGAATAACTACAACCAGCGTACTGAAACTGGCCCTGCCGTGTTGATTATCAAACATGCCCGCGTCAAAGATCCACAAGGTGTCTATCCAGTTCAGTTAACTAACGTCTGGGATGGTACAAAACTTCTGTTTGATCCCGCAATTCCTGAGATCAGTGCATTCGCGCAAAGTCTGCCCAAGGATGTCACGTACTCCACCCAAAACTCATATGGATCCAGTTCAACCCCAAACTATACCCAATCCAATGCTGGGTCTCAATTTAACTCAGAAGAAAATTTCATGAAGCAAGCCCGTATTGTTACCATTTCGGAAATGAAAAAACTCAAAGTGGACACTTACTGTGTTACCGTTGCCTCTACCGACAAGATCCGCCTCTCAAACCAAGGTTGGTTTTTTTATGGCTGCACTGAATGCTCTTTGAAATGTGAGGGAACTGAACCACCATTTATTTGTAAGAAGGGCCATCAGACAACTGACCCACTCATCAAGTACAAATTAGATGTTGAAGTGGGTGACTCCACAGATAGTGCAAAATTCGTCCTTTGGGACAGTTCCCTCGATGATTTGGTTGGATTGACTGCCAAAGCCCTGCTTGAAATTCAACATAAGCGTGGTGTTGCGTGCCCACAGGAATATCCAAAGAATCTTGAGGACCTGATGGACAGGAAATTCGCATTCCGCGTCAAGTGGCAGCCAGGTTGGGGGGGGCAAGCAACAGTGTCCCTCTGTAAAGATAGCCCAGATTTGATCAAGAAGATCCAAGAACATCTACCTGTAGCTGAGAGTACACGCCAAGACAATCAAACCATTGAAGGCATTGAGGAAGATGTTGATCCTGTCCTCACATCACCCGGAACCCAGCACTTCACAGGTTCTGACATAGACAAGTTTGCTTCCTTGGATGATTCAATTCTATCAACTCCAAATTCCTCCGCTACTGGTGAAAATGACATGTCAGCTTCAAATGTTAAATGCTCCGGCAAAAGAAGTGCTGCAAAACACCCCCAGCTGGATGGTTCAAACCTTGATTCCCAGTTTTCCGCAACGCGAACCGGGAAGCTTATCAAGAAGGAGAAACTTTGA 1554 0.4505 MWTVFKADTADHIQLLLRDKEGDTIQATVMGGEMETWKPMLTEGKTYYMRNFRVFDNTSDYKVTTHKFRLTFVNATRVQPVDIAGIPNTMFKFKDFAEILAGNYKPDYLVDAIGVVHDIRKVVTGMPGRKSNVTFTIKDLSDTVMDCTLWDTLSVEFMNNYNQRTETGPAVLIIKHARVKDPQGVYPVQLTNVWDGTKLLFDPAIPEISAFAQSLPKDVTYSTQNSYGSSSTPNYTQSNAGSQFNSEENFMKQARIVTISEMKKLKVDTYCVTVASTDKIRLSNQGWFFYGCTECSLKCEGTEPPFICKKGHQTTDPLIKYKLDVEVGDSTDSAKFVLWDSSLDDLVGLTAKALLEIQHKRGVACPQEYPKNLEDLMDRKFAFRVKWQPGWGGQATVSLCKDSPDLIKKIQEHLPVAESTRQDNQTIEGIEEDVDPVLTSPGTQHFTGSDIDKFASLDDSILSTPNSSATGENDMSASNVKCSGKRSAAKHPQLDGSNLDSQFSATRTGKLIKKEKL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01120 517 MobiDBLite consensus disorder prediction 464 504 - -
Trre13g01120 517 Pfam Domain of unknown function DUF223 15 109 IPR003871 -
Trre13g01120 517 SUPERFAMILY Nucleic acid-binding proteins 7 81 IPR012340 -
Trre13g01120 517 CDD RPA1_DBD_A_like 1 78 - -
Trre13g01120 517 SUPERFAMILY Nucleic acid-binding proteins 91 221 IPR012340 -
Trre13g01120 517 CDD RPA1_DBD_B_like 111 216 - -
Trre13g01120 517 Gene3D - 237 413 IPR012340 -
Trre13g01120 517 SUPERFAMILY Nucleic acid-binding proteins 256 389 IPR012340 -
Trre13g01120 517 Gene3D - 2 80 IPR012340 -
Trre13g01120 517 Gene3D - 85 225 IPR012340 -
Trre13g01120 517 MobiDBLite consensus disorder prediction 464 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01120 Trre-Chr13 8882718 8885376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01120 17 385 Core DNA Replication Machinery Family AT5G08020 21.615 2.28e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01120 - - tpra:123884216 643.654