Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01117 ATGCTTCAAATCCAAGGCTACCTAGCATTATTCCTATTATGGTTCATTTCAACAATTTTCATTAGATTACTTTTCAAAAAATCTGAATGTTATAAATTACCACCTGGTCCCCCAATTTCATTACCAATCTTAGGACATGCACCTTATCTTAGATCACTTCTTCATACATCACTTTACAAACTTTCAATTCGTTATGGCCCTTTAATGCATATTATGCTTGGTTCACAACATGTCATAGTTGCATCATCAGCTGAAAGTGCTAAACAAATTTTGAAAACTTGTGAAGAGTCTTTCATCAATAGACCAATTATGATTGCTAGTGAGAATTTAACATATGGTGCTGCTGATTATTTTTTCATACCTTATGGTACTTATTGGAGGTTTCTTAAGAAGCTCTGTATGACAGAGCTTCTTAGCGGGAAAACTCTCGAACACTTTGTTAGTATTCGAGAGGATGAAATTAAGTGTTTTTTGGGTACCCTTTTGGATATATCTAAAAGTGGTAAACCAATTGAAATGAGGCATGAACTTATTAGACATACTAATAATATCATTTCTAGAATGACTATGGGAAAAAAGAGTAATGGTATGAATGATGAAGTTGGTGAGTTGAGAAAAGTGATTAGGGAGATTGGTGAACTTCTTGGTGCATTTAATTTGGGTGATATTATTGGATTTATGAGGCCTTTTGATTTACAAGGATTTGGAAAAAGGAATAGAGATACACATCATAAGATGGATTTGATGATGGAGAAAGTGTTGAAGGAACATGAAGAAGTTAGAGCTATAGAAGGTGCTGGTAGTGATAGAAAGAAGGATCTGTTTGATATTTTGTTGAACTTGATTGAAGCTGATGGAAGTAAACTCACTAGACAAAGTGCTAAAGCTTTTGCTCTGGACATGTTCATTGCAGGAACAAATGGGCCAGCAAGTGTGTTAGAATGGGCACTAGCAGAGTTAATAAGAAATCCACATGTTTTCAAGAAAGCAAGAGAAGAAATTGATTCAGTTGTTGGCAAAGAAAGACTTGTTAAAGAATCAGATATACCAAATTTACCTTATCTTCAAGCAGTAGTTAAAGAAACTCTTAGAATGCATCCACCAACTCCAATATTTGCAAGAGAAGCTATAAGAACTTGTCAAGTTGATGGATATGATGTTCCAGAAAATTCAAAGATTTTCGTCAATGCATGGGCTATTGGTAGAGATCCTAACTATTGGGACAATCCATTAGTTTATGACCCTGAAAGATTCTTCATCAATGATGATCCTAGCAAGAGTAAAATTGATGTTAGAGGACAATATTATCAACTTTTGCCATTTGGTAGTGGGAGAAGAAGTTGTCCTGGTGCTTCACTTGCTTTGCTTGTTATCCAAGCAACACTTGCAAGTTTGATACAATGCTTTGATTGGGTTGTTAATGATGGTAAAGATCATGATCTTGATATGTCTGAGGTAGGAAGGGTTACTGTGTTTTTGGCCAAACCACTTAAGTGCAAGCCTGTTCCACATTTTGTTCCATTCTCTGCTTGA 1533 0.3536 MLQIQGYLALFLLWFISTIFIRLLFKKSECYKLPPGPPISLPILGHAPYLRSLLHTSLYKLSIRYGPLMHIMLGSQHVIVASSAESAKQILKTCEESFINRPIMIASENLTYGAADYFFIPYGTYWRFLKKLCMTELLSGKTLEHFVSIREDEIKCFLGTLLDISKSGKPIEMRHELIRHTNNIISRMTMGKKSNGMNDEVGELRKVIREIGELLGAFNLGDIIGFMRPFDLQGFGKRNRDTHHKMDLMMEKVLKEHEEVRAIEGAGSDRKKDLFDILLNLIEADGSKLTRQSAKAFALDMFIAGTNGPASVLEWALAELIRNPHVFKKAREEIDSVVGKERLVKESDIPNLPYLQAVVKETLRMHPPTPIFAREAIRTCQVDGYDVPENSKIFVNAWAIGRDPNYWDNPLVYDPERFFINDDPSKSKIDVRGQYYQLLPFGSGRRSCPGASLALLVIQATLASLIQCFDWVVNDGKDHDLDMSEVGRVTVFLAKPLKCKPVPHFVPFSA 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01117 510 CDD CYP93 66 501 - -
Trre13g01117 510 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 FunFam Cytochrome P450 family protein 25 499 - -
Trre13g01117 510 SUPERFAMILY Cytochrome P450 34 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PANTHER CYTOCHROME P450 98A9 12 503 - -
Trre13g01117 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Trre13g01117 510 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 Gene3D Cytochrome P450 25 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01117 510 Pfam Cytochrome P450 34 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01117 Trre-Chr13 8870888 8873978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01117 1 502 Cytochrome P450 AT5G06900 39.764 3.10e-130 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01117 K24188 K15814 gmx:100037459 845.884