Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01101 ATGAGCATAGCTATTGAAGTTGTGGTGGCTCTTGGAGCAGTTTTGGTTGGATTGATCCATTTTTTGCATGTGTTGGTTTTGAAACCAAAATCACTAAGATCAAAGCTTCATAAGCAAGGGATTCATGGCCCTTCTCCTCACTTCTACTTTGGTAATATTCAAGAAATGAAGACCCTTTTACTCCAACAACAAGAATCACAAGCCAAGCACAAACAAGAAGAAGAAAAAGATGTTTTTGTTTCTATATCTCATAATTGGACTTCAAATTTGTTACCTCATATTCACAAATGGAAAAAACAATATGGTCCCACATACTTGTTTTCTTCTGGGAGTATACAATGGTTAATGGTGACAGATATGGAGTTGGTGAAGGAAATTATCCTAAACACATCTTTGAATCTAGGAAAACCTTCTTATCTTTCCAAAGATATGGGTCCACTCCTAGGCCAAGGTATAGTATCATCAAGTGGCTTGATTTGGGCTCATCAAAGGAAGATAATCGCGCCTGAATTTTACCCAGACAAAGTGAAGGCAATGATTGATCAAATAGTTGACTCCACAAATATAATGGTAAGATCATGGGAGAATAAAATAGAAAGAGACGGAGTAGTTTCAGAGATTAAAATCGATGAGGATCTGCGAAGCTTGTCTGCTGACATAATTGCTAGAGTTTGTTTTGGGAGCAATTATGTCGAAGGGAAAGAAATATTCACAAAGCTTGGAGATCTTCTAAAGCACCTCTCCAAGATATATATTGGAATTCCAGGCTTTAGATACTTGCCAAACAAAAACAATAGACAGATATGGAGATTAGAGAAAGAGATTAACTCAAATATATCAAATCTCGTAAAACAGCGCCAAGAAGAAGGTCGTGAGCAAGATCTCTTGCAAATGATACTTGAGGGTGCAACGAATTGTGAGGGCAGTGACGGCCTCTTATCAAGTTCAATCTCAAGAGACAGATTCATTATAGATAACTGCAAAACTATATTCTTTGCTGGACATGATACTACTTCAATTACAGCATCGTGGTGCTTAATGTTGTTAGCTACATACCAAGATTGGCAAGATCGTGCTCGTGCAGAGGTGCTTGAAGTTTGTGAAAACGGTAATCCAGATTCAAGTATGCTTAGAAGCATGAAAACGTTAACCATGGTAATTCAAGAGACTTTGAGGCTTTATCCACCAGCAGTATTTGTCACCAGAACAGCTTTCGAAGATATTAACATAAAAGGTATCAAAGTTCCAAAAGGAATGAATATTCAGATTCCAATCTCAATATTGCAGCATGACATTGATCTTTGGGGTCCCGATGCCCTCGAGTTCAATCCAGAAAGATTTGCAAATGGCGTGATTGGATCCTGCAAGATTCCACAAGCTTATATGCCATTTGGAATAGGCTCCCGTGTCTGTCCCGGACAGCACTTATCCATGATAGAATCGAAGGTGTTTTTGTCACTGATTCTGTCAAAGTTTCGCTTCTCTCTTTCATCAAGTTACTGTCATTCACCGGCCTTTCGTTTGGTTATAGCACCTGGCAAGGGAGTTGTTCTCAATATGACAAGAATTTAA 1572 0.3855 MSIAIEVVVALGAVLVGLIHFLHVLVLKPKSLRSKLHKQGIHGPSPHFYFGNIQEMKTLLLQQQESQAKHKQEEEKDVFVSISHNWTSNLLPHIHKWKKQYGPTYLFSSGSIQWLMVTDMELVKEIILNTSLNLGKPSYLSKDMGPLLGQGIVSSSGLIWAHQRKIIAPEFYPDKVKAMIDQIVDSTNIMVRSWENKIERDGVVSEIKIDEDLRSLSADIIARVCFGSNYVEGKEIFTKLGDLLKHLSKIYIGIPGFRYLPNKNNRQIWRLEKEINSNISNLVKQRQEEGREQDLLQMILEGATNCEGSDGLLSSSISRDRFIIDNCKTIFFAGHDTTSITASWCLMLLATYQDWQDRARAEVLEVCENGNPDSSMLRSMKTLTMVIQETLRLYPPAVFVTRTAFEDINIKGIKVPKGMNIQIPISILQHDIDLWGPDALEFNPERFANGVIGSCKIPQAYMPFGIGSRVCPGQHLSMIESKVFLSLILSKFRFSLSSSYCHSPAFRLVIAPGKGVVLNMTRI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01101 523 PANTHER CYTOCHROME P450 FAMILY MEMBER 23 506 - -
Trre13g01101 523 SUPERFAMILY Cytochrome P450 85 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Trre13g01101 523 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 PRINTS P450 superfamily signature 471 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 Pfam Cytochrome P450 90 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 Gene3D Cytochrome P450 28 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 Coils Coil 56 76 - -
Trre13g01101 523 PRINTS E-class P450 group I signature 216 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 PRINTS E-class P450 group I signature 98 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01101 523 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01101 Trre-Chr13 8728087 8731040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01101 122 520 Cytochrome P450 AT5G24900 45.232 9.70e-126 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01101 K24544 - gmx:100780335 781.941