Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01100 ATGTTGGAGAGAATGAGCATAGCTATTGAAGTTGTGGTGGCTCTTGGAGCAGTTTTGGTTGGATTGATCCATTTTTTGCATGTGTTGGTTTTGAAACCAAAATCACTAAGATCAAAGCTTCATAAGCAAGGGATTCATGGCCCTTCTCCTCACTTCTACTTTGGTAATATTCAAGAAATGAAGACCCTTTTACTCCAACAACAAGAATCACAAGCCAAGCACAAACAAGAAGAAGAAAAAGATGTTTTTGTTTCTATATCTCATAATTGGACTTCAAATTTGTTACCTCATATTCACAAATGGAAAAAACAATATGGTCCCACATACTTGTTTTCTTCTGGGAGTATACAATGGTTAATGGTGACAGATATGGAGTTGGTGAAGGAAATTATCCTAAACACATCTTTGAATCTAGGAAAACCTTCTTATCTTTCCAAAGATATGGGTCCACTCCTAGGCCAAGGTATAGTATCATCAAGTGGCTTGATTTGGGCTCATCAAAGGAAGATAATCGCGCCTGAATTTTACCCAGACAAAGTGAAGGCAATGATTGATCAAATAGTTGACTCCACAAATATAATGGTAAGATCATGGGAGAATAAAATAGAAAGAGACGGAGTAGTTTCAGAGATTAAAATCGATGAGGATCTGCGAAGCTTGTCTGCTGACATAATTGCTAGAGTTTGTTTTGGGAGCAATTATGTCGAAGGGAAAGAAATATTCACAAAGCTTGGAGATCTTCTAAAGCACCTCTCCAAGATATATATTGGAATTCCAGGCTTTAGATACTTGCCAAACAAAAACAATAGACAGATATGGAGATTAGAGAAAGAGATTAACTCAAATATATCAAATCTCGTAAAACAGCGCCAAGAAGAAGGTCGTGAGCAAGATCTCTTGCAAATGATACTTGAGGGTGCAACGAATTGTGAGGGCAGTGACGGCCTCTTATCAAGTTCAATCTCAAGAGACAGATTCATTATAGATAACTGCAAAACTATATTCTTTGCTGGACATGATACTACTTCAATTACAGCATCGTGGTGCTTAATGTTGTTAGCTACATACCAAGATTGGCAAGATCGTGCTCGTGCAGAGGTGCTTGAAGTTTGTGAAAACGGTAATCCAGATTCAAGTATGCTTAGAAGCATGAAAACGTTAACCATGGTAATTCAAGAGACTTTGAGGCTTTATCCACCAGCAGTATTTGTCACCAGAACAGCTTTCGAAGATATTAACATAAAAGGTATCAAAGTTCCAAAAGGAATGAATATTCAGATTCCAATCTCAATATTGCAGCATGACATTGATCTTTGGGGTCCCGATGCCCTCGAGTTCAATCCAGAAAGATTTGCAAATGGCGTGATTGGATCCTGCAAGATTCCACAAGCTTATATGCCATTTGGAATAGGCTCCCGTGTCTGTCCCGGACAGCACTTATCCATGATAGAATCGAAGGTGTTTTTGTCACTGATTCTGTCAAAGTTTCGCTTCTCTCTTTCATCAAGTTACTGTCATTCACCGGCCTTTCGTTTGGTTATAGCACCTGGCAAGGGAGTTGTTCTCAATATGACAAGAATTTAA 1584 0.3857 MLERMSIAIEVVVALGAVLVGLIHFLHVLVLKPKSLRSKLHKQGIHGPSPHFYFGNIQEMKTLLLQQQESQAKHKQEEEKDVFVSISHNWTSNLLPHIHKWKKQYGPTYLFSSGSIQWLMVTDMELVKEIILNTSLNLGKPSYLSKDMGPLLGQGIVSSSGLIWAHQRKIIAPEFYPDKVKAMIDQIVDSTNIMVRSWENKIERDGVVSEIKIDEDLRSLSADIIARVCFGSNYVEGKEIFTKLGDLLKHLSKIYIGIPGFRYLPNKNNRQIWRLEKEINSNISNLVKQRQEEGREQDLLQMILEGATNCEGSDGLLSSSISRDRFIIDNCKTIFFAGHDTTSITASWCLMLLATYQDWQDRARAEVLEVCENGNPDSSMLRSMKTLTMVIQETLRLYPPAVFVTRTAFEDINIKGIKVPKGMNIQIPISILQHDIDLWGPDALEFNPERFANGVIGSCKIPQAYMPFGIGSRVCPGQHLSMIESKVFLSLILSKFRFSLSSSYCHSPAFRLVIAPGKGVVLNMTRI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01100 527 PRINTS P450 superfamily signature 475 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PRINTS P450 superfamily signature 337 354 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PRINTS P450 superfamily signature 389 400 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PRINTS P450 superfamily signature 466 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PANTHER CYTOCHROME P450 FAMILY MEMBER 27 510 - -
Trre13g01100 527 Pfam Cytochrome P450 94 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 468 477 IPR017972 GO:0005506|GO:0016705
Trre13g01100 527 Gene3D Cytochrome P450 32 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PRINTS E-class P450 group I signature 326 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PRINTS E-class P450 group I signature 102 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PRINTS E-class P450 group I signature 220 238 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PRINTS E-class P450 group I signature 346 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PRINTS E-class P450 group I signature 465 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 PRINTS E-class P450 group I signature 475 498 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01100 527 Coils Coil 60 80 - -
Trre13g01100 527 SUPERFAMILY Cytochrome P450 89 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01100 Trre-Chr13 8728075 8731040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01100 126 524 Cytochrome P450 AT5G24900 45.232 8.43e-126 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01100 K24544 - gmx:100780335 781.941