Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01092 ATGGCTGCAAATTTCTGGACATCATCACATTATAAGCATCTTCGGGATCAAGAAGAGGTGGATATGGTGAATCCACTTGACAAAGAAAAGGGTATCACACTTGAGGATTTTAAGCTTATCAAGATGCAAATGTCCAATTATATTTTGAAATTGGCTCAACAAGTAAAAGTGAGGCAGAGGGTTGTTGCTACTGCAGTTACATACATGAGGCGTGTTTACACAAGTAAGAGTATGGCAGAATATGATCCACGCCTTGTAGCTCCAGCCTGCTTGTACCTTGCATCAAAAGCAGAAGAAAGCACAGTGCAAGCTCGGCTACTTGTATTTTACATTAAGAAATTATACGCTGATGATAAGTATAGGTATGAAATCAAGGACATACTTGAAATGGAGATGAAGATTTTAGAAGCATTGAAGTATTACTTGGTTGTATTCCACCCCTACCGTTCCCTCTCCGGGTTGCTTCAGGATGCCGGTCTGAATGATCTAAGCATGACTCAACTAACTTGGTAA 513 0.4016 MAANFWTSSHYKHLRDQEEVDMVNPLDKEKGITLEDFKLIKMQMSNYILKLAQQVKVRQRVVATAVTYMRRVYTSKSMAEYDPRLVAPACLYLASKAEESTVQARLLVFYIKKLYADDKYRYEIKDILEMEMKILEALKYYLVVFHPYRSLSGLLQDAGLNDLSMTQLTW 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01092 170 SMART cyclin_7 46 136 IPR013763 -
Trre13g01092 170 SUPERFAMILY Cyclin-like 4 144 IPR036915 -
Trre13g01092 170 Gene3D - 19 143 - -
Trre13g01092 170 Gene3D - 7 170 - -
Trre13g01092 170 PANTHER CYCLIN 18 170 IPR043198 GO:0006357|GO:0016538
Trre13g01092 170 FunFam cyclin-C1-2-like isoform X1 19 143 - -
Trre13g01092 170 Pfam Cyclin, N-terminal domain 24 142 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01092 Trre-Chr13 8693286 8696683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01092 59 157 Core Cell Cycle Gene Families AT5G27620 30.303 4.11e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01092 K15161 - gmx:100784345 299.671