Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01090 ATGGCTTCAAGGTTCACAACATTTGCCTCTATACCTAAGAAAGAACAAGAAGAGGCGGAAATGGAAGAACATCGGATCTTGATGGCAAAAATCAACTTGTGCAAAGAAAAAATCCAAGGTGATCGAACTGCATCAATCAAAGATAAACTTCGGATAAATGGGGAGAATCTTCGGCTACAACTTTCCAAGGTCTTGGCAATAATGTCAAGAAAGGCTGAAGAGGATATTGTTCACATATTTTCTTCCAAAATTAATCACCCATTGCATAAATTTGATGGTTTTTCTAAAGGTTCAAGAAAAGACGAAGAAATTATCAATCACGATATATTTTTTGAAGAAAGTATCATGCTACCAGAAGAAAAAGAAGAAAAGATACCTCGTTTTACATTCTGGTCACATTTGGTCAGAAATAAGATAATGACCAAAGATCAAGCATTTTCTGCGAGACGAAATATATATTATGATCAACACGGTGAAGCTTTAATATGCAGTGATCCCGATGAAGAGGTCAAAGAGAATAGAGAAGTTAAACATGATTTTTCTCATGGTGAAGACCAAATTATATGGATGGCATTTGAGGAACACAATTTAACTGAGGAGTTGTTGAGTATTGTTCGAAGCTGTATTGGGCGTACCTGTTCAGAGATTCAGGAGAGGTATAAATATCTCAAGGAAAAGGACATGCATTCTAGAGAAAATGGATCTAGTGCTGGCATATGTTTGGACAAAAGTTTGAGTGAAGCTATAAATACTTTGGATCACTTGTTTTGTCGTCGTTGCATGATTTATGATTGTCCATTCCACGAATGTCCACAAAGGTTACTTTATCCAACTGAAAAGCAACCAACTTGGAATGTACCGGAAAATGAAAGACAACCATGTGGTGAACATTGTTACCTTGAGTTAAAGGATGCCAATACAAATTCAACTCCAGAGACTTTGCTAGGTAAAGAAATCAAAACAATAGAAACTGTAGATGATGTATTTGCATCCTCTAGTTCAAAGAAAATCACAGATAAAATAGAATTGATGAGATTATCCAACTCAATGGAAAAGCAAGAACAAGATGATAGCTCAGATTGGAAACCCTTGGAGAAAGAATTATGTTTGAAGGGAATAGAAATGTTTGGGAAAAACAGTTGTCTTATATTTCGGAACTTACTTTGTGGATTCAAGACTTGCGTGGAAATAGGCATCTACATGTCTGAAAGGTTCAAGGACCATGAGATACCATCAAGTTCAAGGAAATCTAAGAGAAAAGGAAAAAGCAAGAGATTTTTTCATAGGAGAAGAAATTATATTGGCAGGGAACAAAACGGACCCCTTAACCATTATACACCTTGTGAGTGTCAAGGAATGTGTGGAAAAGAATGTCCTTGTTATGTTAAAGGACCTAAAGGAACTTGTGAAAAATATTGTGGGTGTGCAAAGCAATGCAATAATAGGTACAAAGGATGTCTCTGTGAGAAAGGTCAATGTGATAAAGGATATTGTCCATGTTTTGCAGAAGGTCGTGAATGTGACCCTGATGTCTGTATAAATTGTTGGGTTAGGTGTGGCGATGGTTCATCCCAGGAGCCACCTAATCAAGAAAAGGGTCAATGTAAAAATATGAAAGTGTTTTTGGGGAGAAAACAAAAGATTCTTTTAGGTCCGTCTGAAGTTGCTGGATGGGGAGCCTTCATAAAGAACCCCGTCAAAAAAGATGAATATTTAGGAGAGTACACAGGTGAATTAATCTCTCATGAGGAAGCAGAAAAACGTGGTACATTATATGAGCATGCAGGCTTCTCTTATCTCTTTGACTTGGATGATAAGTATTGTATTGATGCTTATCGTATGGGAAACAAGTTAAAATTTGCAAACCACTCATCAGAGCCCAATTGTTATCCAAGGGGTGTATTTGTTGGAGGAGACCATCGAATAGGCATATTTGCCAAGGAAGACATTAAAGCTGGTGAAGAACTTTTCTATGACTACCACTATACAAAATATCAAAAAACACCTAAATGGTTTCGTGAACTATCCAAGGAAAAAGAATCTAATAAAAATTCTCGTGGCAAAGGCAAAGTCAGTTCAAAGGTCAAGTAA 2091 0.3673 MASRFTTFASIPKKEQEEAEMEEHRILMAKINLCKEKIQGDRTASIKDKLRINGENLRLQLSKVLAIMSRKAEEDIVHIFSSKINHPLHKFDGFSKGSRKDEEIINHDIFFEESIMLPEEKEEKIPRFTFWSHLVRNKIMTKDQAFSARRNIYYDQHGEALICSDPDEEVKENREVKHDFSHGEDQIIWMAFEEHNLTEELLSIVRSCIGRTCSEIQERYKYLKEKDMHSRENGSSAGICLDKSLSEAINTLDHLFCRRCMIYDCPFHECPQRLLYPTEKQPTWNVPENERQPCGEHCYLELKDANTNSTPETLLGKEIKTIETVDDVFASSSSKKITDKIELMRLSNSMEKQEQDDSSDWKPLEKELCLKGIEMFGKNSCLIFRNLLCGFKTCVEIGIYMSERFKDHEIPSSSRKSKRKGKSKRFFHRRRNYIGREQNGPLNHYTPCECQGMCGKECPCYVKGPKGTCEKYCGCAKQCNNRYKGCLCEKGQCDKGYCPCFAEGRECDPDVCINCWVRCGDGSSQEPPNQEKGQCKNMKVFLGRKQKILLGPSEVAGWGAFIKNPVKKDEYLGEYTGELISHEEAEKRGTLYEHAGFSYLFDLDDKYCIDAYRMGNKLKFANHSSEPNCYPRGVFVGGDHRIGIFAKEDIKAGEELFYDYHYTKYQKTPKWFRELSKEKESNKNSRGKGKVSSKVK 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01090 696 SMART CXC_2 481 518 IPR033467 -
Trre13g01090 696 MobiDBLite consensus disorder prediction 676 696 - -
Trre13g01090 696 Gene3D SET domain 445 663 IPR046341 -
Trre13g01090 696 SMART set_7 546 667 IPR001214 GO:0005515
Trre13g01090 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 20 674 IPR045318 GO:0006338|GO:0042054
Trre13g01090 696 Pfam SET domain 557 660 IPR001214 GO:0005515
Trre13g01090 696 ProSiteProfiles CXC domain profile. 429 532 IPR026489 -
Trre13g01090 696 SUPERFAMILY SET domain 434 669 IPR046341 -
Trre13g01090 696 Pfam CXC domain 485 516 IPR041355 -
Trre13g01090 696 CDD SET_EZH 546 662 - -
Trre13g01090 696 ProSiteProfiles SET domain profile. 546 661 IPR001214 GO:0005515
Trre13g01090 696 FunFam Putative histone-lysine N-methyltransferase EZH2 445 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01090 Trre-Chr13 8674138 8682799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01090 535 660 C2H2 Transcription Factor Family AT2G23740 32.168 2.40e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre13g01090 SET 3.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01090 - - tpra:123892014 1131.7