Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01085 ATGTCTGAGATAATTTCCATTGGAAATGCTGAGGACAAAAAACTGAAGCACAAAATGGAGGAGAATTCAGAGTCGAGATTTGAGAAGGTTCCAATAGTAATACCTTCATCCTCTCAGTCTAATGTTGAGGATATAGTTACTCCAAAGCTTAACATTTGCACCAAGTCCACTTCCAAACCATTGGAGATTGGTGAACATTCAAGTTCATCTCAAAATGCTACAGGTGAACTTTCATCTCAAAATACTATAGATGAACCCATATATAAGAATGCTAATGATGAACTTTTACCTGAGCAAGAAGTGAGGGATCAATTCCCTTGTCATTACTGTGACAAGAAATTCTCCTCTCCTCAAGCACTTGGAGGACACCAAAACGCTCATAAGAGTGTACGTGACTTCAAAAAACTTGAAGCACAGAGAAGAGAGGATGAAATAGATTCGATCATAGCGTCTAGATCTTATAATCAAACATACCCTTATTCATTTTCAAGCCCTCACTATCATGGGTATTCTTATTTCCGTAATGCTAATTTTTCCCTCCCAATTAACACCCACATGAACAATACCATGACTTCTTGGGATAGTGGTTCTCTTTCTAGTGGCTATGGTGGGTTGTATATGCCAAATACAACCCCTACATCATCTCAATTTGTGATGCAAATGCCAAATTCATCCTTAGCAACACCACAATTTGGTATGACTAATTTTTGGAGTGGAAATCAAAATGCTTCATTACCAATTTCACAAAGGTCAAACACTCTCGGTTTAGGGCTTTTTCCTCAAGCAAATCAAACCCCTTCAATCGTGGAGGGTGCAGCAAGAAATGTGAATGCTCAAGTTGGTTCTCAAACTCTTCAATTGTTACCTTGTGATCCTATTGGAGAAGAGTCAATTCAAACAAATTCCAATGCGTCTTTATCATCAACTCAATCAACCTCAGGGGAAATTAACTTGGATCTCACCCTTTAA 969 0.3829 MSEIISIGNAEDKKLKHKMEENSESRFEKVPIVIPSSSQSNVEDIVTPKLNICTKSTSKPLEIGEHSSSSQNATGELSSQNTIDEPIYKNANDELLPEQEVRDQFPCHYCDKKFSSPQALGGHQNAHKSVRDFKKLEAQRREDEIDSIIASRSYNQTYPYSFSSPHYHGYSYFRNANFSLPINTHMNNTMTSWDSGSLSSGYGGLYMPNTTPTSSQFVMQMPNSSLATPQFGMTNFWSGNQNASLPISQRSNTLGLGLFPQANQTPSIVEGAARNVNAQVGSQTLQLLPCDPIGEESIQTNSNASLSSTQSTSGEINLDLTL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01085 322 MobiDBLite consensus disorder prediction 300 322 - -
Trre13g01085 322 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Trre13g01085 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Trre13g01085 322 Pfam C2H2-type zinc finger 105 129 - -
Trre13g01085 322 MobiDBLite consensus disorder prediction 1 27 - -
Trre13g01085 322 SUPERFAMILY beta-beta-alpha zinc fingers 104 132 IPR036236 -
Trre13g01085 322 Gene3D Classic Zinc Finger 96 158 - -
Trre13g01085 322 MobiDBLite consensus disorder prediction 57 85 - -
Trre13g01085 322 MobiDBLite consensus disorder prediction 9 27 - -
Trre13g01085 322 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 22 321 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01085 Trre-Chr13 8635634 8636602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01085 52 206 C2H2 Transcription Factor Family AT5G25160 30.864 1.98e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g01085 zf-C2H2_6 3.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01085 - - tpra:123892015 425.631