Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01082 ATGAGCATAGATGTTGAAGTTATTGTGGCTCTAGGAGCAGTTTTGGTTGTATCAATCCATTTTTTGAATGTTTTGGTTTTGAAACCAAAATCACTAAGATCAAAGCTTCATAAGCAAGGGATTCATGGCCCTTCTCCTCACTTCTACTTTGGTAATATTCAAGAAATCAAAACACTTATACTCCAACAACAAGAATCACAAGCCAAACAAAAACAAGAAGATGAAGATGTTTGTGTTTCTATATCTCATAATTGGACTTCAACTTTGTTCCCTCGTATTCACAAGTGGAGAAATCAATATGGTCCAATATACTTATTTTCTTCTGGGAGTATACAATGGTTAATGGTGGCAGATATGGAGATGGTGAAGGAAATTCTCCTAAATACCTCTTTGGATCTAGGAAAGCCTTCTTATCTTTCCAAAGATATGGGACCACTCTTAGGACAAGGTATATTATCCTCAAGTGGACCTATTTGGGCTCACCAGAGAAAGATAATCGCGCCTGAATTGTACCTAGACAAGGTGAAGGCAATGGTTGATCAGATAGTTGACTCGACAAATATAATGCTAAGATCATGGGAGAGTAGAATAGAACGAGACGGAGTAGTTTCAGAGATTAAAGTTGATGAAGATCTGCGAAGCTTGTCAGCTGACATAATTTCTAGAGCTTGTTTTGGAAGCAATTATGTTCAAGGGAAAGAAATATTCACAAAGCTTAGAGATCTTCAAAAGGTCCTCTCCAAGATATATGCTGGAATTCCAGGCTTTAGATACTTGCCAAACAAAACCAATAGACAGATATGGAGATTAGAGAAAGAGATCAACACAAATATATCAAAGCTCGTAAAACAGCGCCAAGAAGAAGGTCGTGAGCAAGATCTCTTGCAAATGATACTCGAGGGTGCAAAAAATTGTGAGGGAAGTGATGGCCTCTTATTACCAAATTCAGTTGCACGAGACAGGTTCATTATAGATAACTGCAAAAATATATTCTTTGCTGGACATGAAACTACTGCAATTACAGCATCTTGGTGCTTAATGTTGTTAGCTACATACCAAGATTGGCAAGATCGTGCTCGTGCAGAGGTACTTGAAGTTTGCGGAAATGGTAATCCAAATGCAAGTATGCTTAGAGGCATGAAAACGTTAACCATGGTGATTCAAGAGACTTTGAGGCTTTATCCACCAGCAACATTTGTTGTCAGAACAGCTTTTCAAAATATAAACATGAAAGGCATTGAAGTTCCAAAAGGAATGAATATTCAGATTCCAATTCCAATATTGCAGCATGACATTGATCTTTGGGGTCCCGATGCCCACAAGTTCAATCCAGAGAGATTTGCGAATGGCGTGCTTGGAGCCTGCAAGATTCCACAAGCTTATATGCCATTTGGAATAGGCGCACGTGTCTGTGCCGGACAGCATTTAGCCATGATAGAATTGAAGGTGATTTTGTCTCTCATTCTGTCAAAGTTTCGCTTCTCTCTTTCATCAAGTTACTGTCATTCACCGGCCTTTCGTTTGGTTATAGTACCTGGTCATGGAGTTGTTCTTAAAATGACAAGAATTTGA 1572 0.388 MSIDVEVIVALGAVLVVSIHFLNVLVLKPKSLRSKLHKQGIHGPSPHFYFGNIQEIKTLILQQQESQAKQKQEDEDVCVSISHNWTSTLFPRIHKWRNQYGPIYLFSSGSIQWLMVADMEMVKEILLNTSLDLGKPSYLSKDMGPLLGQGILSSSGPIWAHQRKIIAPELYLDKVKAMVDQIVDSTNIMLRSWESRIERDGVVSEIKVDEDLRSLSADIISRACFGSNYVQGKEIFTKLRDLQKVLSKIYAGIPGFRYLPNKTNRQIWRLEKEINTNISKLVKQRQEEGREQDLLQMILEGAKNCEGSDGLLLPNSVARDRFIIDNCKNIFFAGHETTAITASWCLMLLATYQDWQDRARAEVLEVCGNGNPNASMLRGMKTLTMVIQETLRLYPPATFVVRTAFQNINMKGIEVPKGMNIQIPIPILQHDIDLWGPDAHKFNPERFANGVLGACKIPQAYMPFGIGARVCAGQHLAMIELKVILSLILSKFRFSLSSSYCHSPAFRLVIVPGHGVVLKMTRI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01082 523 PRINTS P450 superfamily signature 471 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Trre13g01082 523 Pfam Cytochrome P450 91 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 SUPERFAMILY Cytochrome P450 85 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PANTHER CYTOCHROME P450 FAMILY MEMBER 22 515 - -
Trre13g01082 523 Gene3D Cytochrome P450 28 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS E-class P450 group I signature 97 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS E-class P450 group I signature 384 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS E-class P450 group I signature 215 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre13g01082 523 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01082 Trre-Chr13 8610782 8613352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01082 121 520 Cytochrome P450 AT5G24900 46.229 5.50e-131 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01082 K24544 - gmx:100780335 819.305