Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01077 ATGAACGAAGACTTCGATATCCCTCAAGCCGAAGAAATGAACGAGGATTTCGATCTCCCTGAAGACAAGGTAGGGGAGGAGAGACAAGTCGGCGATCGTGGTCTCAAGAAGAAGCTTCTCAAAGAAGGTGAAGGTTGGGATACACCTGAATTCGGAGATGAAGTTCAAGTTCATTACACTGGGACTTTGCTTGATGGAACAAAATTTGATTCAAGTCGTGATAGAGATTCTCCTTTCAGCTTCACGCTTGGACAAGGGCAAGTAATTCAAGGATGGGATGAAGGTATAAAAACCATGAAGAAAGGTGAAAATGCACTCTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGGTTCACCTCCAACAATTCCTCCTAATGCAACACTCCAATTTGATGTTGAGCTGTTGTCTTGGACAAGTGTGAAGGACATATGTAAAGATGGCGGTATATTTAAGAGGATACTTAGTGAGGGGGAGAAATGGGAGAATCCCAAGGATCCTGATGAAGTATTGGTTAATTATGAGGTTCGTCTCGAGGATGGAAAGGTTGTAGCAAAGTCGGATGGAGTGGAGTTCACTGTCGGTGAAGGTCATTATTGCCCTGCATTATCAAAGGCTGTTAAATCCATGAAGAAGGGAGAGAAAGTGATTTTATTAGTAAAGCCTCAATATGGATTTGGTGAGAAGGGGAAGCCAGTGCATGGTGATGAGGGTGCAGTTCCACCAAATGCATCACTGCAGATTACACTTGAGTTGGTTTCTTGGAAGACTGTTACAGATGTGACTAGTGACAAGAAGGTCATAAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAAGGGGCCATTGTAAAATTGAAAATAATTGGTAAGCTGCAAGATGGTACTGTCTTTTTTGAAAAGGGCCGTGATGATGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTCATTGATGGACTAGATAAAGCGGTAATGACTATGAAGAAGGGTGAGGCAGCAATATTGACTATTGCTCCTGAGTATGCATTTGGTTCATCACAGTCCCAGCAGGAGTTGGCTGTAATTCCTTCTAATTCAACTGTGTATTATGAAGTTGAACTAGTGGCATTTGATAAGGAGAAGGAATCTTGGGATATGAACACTGAAGAGAAAATTGAAGCTGCTGCTAAGAAGAAAGAAGAAGGAAATGTTTTGTTTAAAGCTGGTAAATATGCAAGAGCTTCCAAAAGATATGAGAAGGCTGTGAAGTACATAGAGTATGATTCCTCCTTCAGCGAGGAGGAGAAAAAGCTTTCAAAGACCTTGAAGATTGCTTCCTTATTAAACAATGCTGCTTGCAAGTTGAAGTTGAAAGAGTACAAAGATGCAGAGAGATTGTGTACTAAGGTTTTGGACATTGAGAGCACAAACGTTAAAGCCCTCTATAGAAGGGCCCAAGCAAGTATACAGTTAACTGACTTGGATTTGGCTGAAATTGATATTAAAAAAGCTCTTGAGGTTGACCCTGACAACAGGGAAGTAAAGCTGGAGTACAGGAATTTGAAGGAGAAGGTTAAGGAGTACAATAAAAAGCAGGCGAAATTTTATGGAAACATGTTCAGCTTGACAAAGTCTTGA 1638 0.4139 MNEDFDIPQAEEMNEDFDLPEDKVGEERQVGDRGLKKKLLKEGEGWDTPEFGDEVQVHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIQGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKRILSEGEKWENPKDPDEVLVNYEVRLEDGKVVAKSDGVEFTVGEGHYCPALSKAVKSMKKGEKVILLVKPQYGFGEKGKPVHGDEGAVPPNASLQITLELVSWKTVTDVTSDKKVIKKILKEGEGYERPNEGAIVKLKIIGKLQDGTVFFEKGRDDEEKLFEFKTDEEQVIDGLDKAVMTMKKGEAAILTIAPEYAFGSSQSQQELAVIPSNSTVYYEVELVAFDKEKESWDMNTEEKIEAAAKKKEEGNVLFKAGKYARASKRYEKAVKYIEYDSSFSEEEKKLSKTLKIASLLNNAACKLKLKEYKDAERLCTKVLDIESTNVKALYRRAQASIQLTDLDLAEIDIKKALEVDPDNREVKLEYRNLKEKVKEYNKKQAKFYGNMFSLTKS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01077 545 SUPERFAMILY TPR-like 383 540 IPR011990 GO:0005515
Trre13g01077 545 Coils Coil 511 531 - -
Trre13g01077 545 PANTHER PEPTIDYLPROLYL ISOMERASE 6 142 - -
Trre13g01077 545 SMART tpr_5 478 511 IPR019734 GO:0005515
Trre13g01077 545 SMART tpr_5 395 428 IPR019734 GO:0005515
Trre13g01077 545 SMART tpr_5 444 477 IPR019734 GO:0005515
Trre13g01077 545 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g01077 545 SUPERFAMILY FKBP-like 262 397 - -
Trre13g01077 545 MobiDBLite consensus disorder prediction 1 32 - -
Trre13g01077 545 FunFam Peptidylprolyl isomerase 383 538 - -
Trre13g01077 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 253 IPR001179 GO:0003755
Trre13g01077 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 279 375 IPR001179 GO:0003755
Trre13g01077 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 137 IPR001179 GO:0003755
Trre13g01077 545 Pfam Tetratricopeptide repeat 479 511 IPR019734 GO:0005515
Trre13g01077 545 FunFam Peptidylprolyl isomerase 258 380 - -
Trre13g01077 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 140 IPR001179 GO:0003755
Trre13g01077 545 Gene3D - 143 257 IPR046357 GO:0003755
Trre13g01077 545 SUPERFAMILY FKBP-like 144 260 - -
Trre13g01077 545 Gene3D Tetratricopeptide repeat domain 381 538 IPR011990 GO:0005515
Trre13g01077 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 257 IPR001179 GO:0003755
Trre13g01077 545 FunFam Peptidylprolyl isomerase 25 143 - -
Trre13g01077 545 ProSiteProfiles TPR repeat profile. 478 511 IPR019734 GO:0005515
Trre13g01077 545 Gene3D - 6 142 IPR046357 GO:0003755
Trre13g01077 545 SUPERFAMILY FKBP-like 17 147 - -
Trre13g01077 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 378 IPR001179 GO:0003755
Trre13g01077 545 FunFam Peptidylprolyl isomerase 144 257 - -
Trre13g01077 545 Gene3D - 258 379 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01077 Trre-Chr13 8579324 8584050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01077 23 541 Calmodulin-binding Proteins AT3G25230 78.035 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01077 K09571 - gmx:100812632 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01077 13 8579324 8584050 Trre15g00333 15 2307066 2309811 PCT