Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01075 ATGGGTATTTCTAGGAGTTCATTGGTCAAGAGACGTGCTACTGGTGGCAAGCAGAAAGTCTGGAGAAAGAAGCGAAAGTACGAGCTTGGTCGCCAGCCAGCAAACACTAAGTTGTCAGGCAACAAGACAATTAGGAGGATCCGTGTTAGAGGTGGCAATGTGAAATGGAGAGCTCTTAGATTGGATACTGGAAATTTTAGCTGGGGTAGTGAAGCAGTAACTCGCAAGACTCGTCTTCTTGATGTGGTTTACAATTCCTCAAATAATGAGCTTGTTAGAACTCAAACTCTGGTTAAGAGTGCTATTGTCCAAGTTGATGCTGCACCATTCAAGCAGTGGTATCTTCAGCATTATGGTGTTGAAATTGGTAGAAAAAAGAAAACAGCTTCCAAGAAGGATTCTGCTGAGGAAGCTGAAGTTGTTGCTGAAGAAGTCAAGAAAAGTAATCACGTGCAGAGAAAACTTGAGCAGCGTCAGAAAGATAGACAACTTGATCCCCACATTGAAGAGCAATTTGGTGGCGGCCGTTTGCTAGCCTGTATTTCATCTCGCCCAGGTCAATGTGGCCGATCTGATGGGTACATTCTTGAAGGTAAGGAGCTGGAATTTTACATGAAGAAATTACAGAAGAAGAAAGGAAAGGGTGCTACTGCTTAA 657 0.4338 MGISRSSLVKRRATGGKQKVWRKKRKYELGRQPANTKLSGNKTIRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNSSNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTASKKDSAEEAEVVAEEVKKSNHVQRKLEQRQKDRQLDPHIEEQFGGGRLLACISSRPGQCGRSDGYILEGKELEFYMKKLQKKKGKGATA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01075 218 FunFam 40S ribosomal protein S8 161 214 - -
Trre13g01075 218 Pfam Ribosomal protein S8e 6 196 IPR022309 -
Trre13g01075 218 CDD Ribosomal_S8e_like 5 196 - -
Trre13g01075 218 Gene3D - 161 214 - -
Trre13g01075 218 Gene3D - 32 160 - -
Trre13g01075 218 NCBIfam ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Trre13g01075 218 FunFam 40S ribosomal protein S8 32 160 - -
Trre13g01075 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 214 IPR001047 GO:0003735|GO:0005840|GO:0006412
Trre13g01075 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01075 Trre-Chr13 8573314 8575276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01075 1 205 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 82.927 2.70e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01075 K02995 - gmx:100500112 371.703