Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01072 ATGGAAAATCAATTCTTTTCAAACACAAATGTTCATTTTGAACAATCACAACAACAACCTTCTTCAATGCCAACATGGCAATCACTATCATCATCAGAACAACAACAACAAAACCAAGATTGTTTTTACACACCAACATGGGAAAAATCAACAACAGATCAATGTGTTCATAATCAATTTGATTCAGCACTTAGTTCAATGGTATCTTCACCTGCAGCATCAAATTCCAACATGTCAAATGAAAACTTTGTCATTAGAGAATTAATTGGTAAATTAGGAAACATTGGTAATTGTTCTGATGAGATCTCACAAACTTTAATTGCTGCAAATTCATACAATAATTCATGTTACAACACACCTTTAAATTCTCCACCTAAATTGAACATTCAAACAATGGCTATGAACTCAACTGTTGCAGAATTTTCAACTGATCCTGGTTTTGCTGAAAGAGCTGCTAAATTTTCTTGCTTTGGAAGTAGAAGTTTCAATGGAAGAACAACACAAACACAATTGAATCAAATTCAAAGATCTACTCCATTGATAGAAAATGGAAAACTCACTAGAGTTTCAAGTAGTCCATCATTGAAAGAACTTGGATCTCAAGAAAATATGAATTGTTCTTCTCAATTGCAGGATCAAATTGATGTTAACAATAATAATTCTCAAGAAGATTCAACAATCTCTGAAAATGGTGTTAAACCTTCTCCTTATGTGAATTCAAGAAAAAGAAAAGTTTCTTCCAAAGGAAAAACCAAAGAAAATTCAACTTCTAGTAATCCTCCAATGGCTTGTGAAGGTGTTGAAGATTCAAATTCAAAGAGAATGAAAACAAATGAAGGTGAAAAAATTGAAAATGGTAAAGTGAAAGCAGAGGAAGATATAAAAGGGGGTACAAATAGTAATAATGGAGGTGATGAAAAACAGAATAAGAGTAACATTAAACCTCCTGAGGCTCCTAAGGATTATATTCATGTTAGAGCAAGAAGAGGTCAAGCTACCGATAGCCATAGTCTCGCCGAAAGAGTTAGGAGGGAGAAAATTAGTGAAAGGATGAAGCTTCTACAAGATCTTGTACCTGGTTGCAATAAGGTAACTGGAAAAGCACTCATGCTTGATGAAATTATAAACTATGTTCAATCATTGCAGCGCCAAGTTGAGTTTCTATCTATGAAATTGGCTACTGTGAACACAAGGGTGGATTTAAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTATGGCACACCCAATATTCCCACAAGATTCCTCAGCACCATCCTATTATGGGCAGCAAAACCCAGCAATTCACAATAACATTTCTAATGGAAATGTGACCCACAACTCAGTGGACCAATTAGAAAATGGTTTATTCCAAAACCTTGGCATGCACTTATCTTCACTAAGTGGATTTAATGATGCTACTTCTCAGTATCCATTAACATTCTCTGAGGATGACCTCCACAGCATTGTTCAAATGGGATTTGGGCAAACTGACAATAGAAAAACACCAATACAATTTCAGAATTTGAACGGCACTAATCAACTACCCCTATGA 1569 0.3448 MENQFFSNTNVHFEQSQQQPSSMPTWQSLSSSEQQQQNQDCFYTPTWEKSTTDQCVHNQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGNCSDEISQTLIAANSYNNSCYNTPLNSPPKLNIQTMAMNSTVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQTQLNQIQRSTPLIENGKLTRVSSSPSLKELGSQENMNCSSQLQDQIDVNNNNSQEDSTISENGVKPSPYVNSRKRKVSSKGKTKENSTSSNPPMACEGVEDSNSKRMKTNEGEKIENGKVKAEEDIKGGTNSNNGGDEKQNKSNIKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLATVNTRVDLSIESLISKDIFQSNNSMAHPIFPQDSSAPSYYGQQNPAIHNNISNGNVTHNSVDQLENGLFQNLGMHLSSLSGFNDATSQYPLTFSEDDLHSIVQMGFGQTDNRKTPIQFQNLNGTNQLPL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01072 522 Gene3D - 328 403 IPR036638 GO:0046983
Trre13g01072 522 Pfam Helix-loop-helix DNA-binding domain 335 382 IPR011598 GO:0046983
Trre13g01072 522 MobiDBLite consensus disorder prediction 173 319 - -
Trre13g01072 522 CDD bHLH_AtBPE_like 321 406 - -
Trre13g01072 522 Coils Coil 378 398 - -
Trre13g01072 522 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g01072 522 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 381 IPR011598 GO:0046983
Trre13g01072 522 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 217 449 IPR024097 GO:0006355
Trre13g01072 522 FunFam Basic helix-loop-helix transcription factor 328 400 - -
Trre13g01072 522 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 399 IPR036638 GO:0046983
Trre13g01072 522 MobiDBLite consensus disorder prediction 173 235 - -
Trre13g01072 522 MobiDBLite consensus disorder prediction 269 294 - -
Trre13g01072 522 MobiDBLite consensus disorder prediction 295 309 - -
Trre13g01072 522 SMART finulus 337 387 IPR011598 GO:0046983
Trre13g01072 522 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01072 Trre-Chr13 8532596 8535659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01072 1 488 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 46.016 1.17e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g01072 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01072 - - tpra:123889043 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01072 13 8532596 8535659 Trre15g00328 15 2257033 2260262 PCT