Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01067 ATGGCAAAACCAGGGGTTTTAGATTCTGATCCAGAGATTATGGTGAAAAAAGCCTTAGAGTTAAAGAAGGAGCTGAAAAAGCTTGTGAAGTCCATTGTTGATGATGAAGATATAAACATTGAAGCTATTGAGAAAGCTAAAGAAATTCTTTGTGTTCTTAAGGATTTGAAGCTAAGAAAGAAATCTCAATCTTCAATGTCTTTTAAGATAAACAAGAATGTTACTTTCCCAGATGAATTCAAATGTCCACTTTCCAATGAATTGATGAGAGATCCTGTCATTGTTTCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGATTAATGCTGGAAATAGAACATGCCCTCAAACTCATCAAATTCTCTCACACACATTCCTTACTCCGAATCATCTTATAAGAGAAATGATAGAAAAATGGTCTAAAAATCAAGGACTTGAATTGTGCAATGTTATTAGTTATATTAATGATGAAGGTGCTAAAGAAGCTGATCAGAATCACTTTTTATGTTTGCTTGAGAAAATGTCATCAACACTTAGTGATAAAAAAGAAGCTGCAAAACAACTTAGATTGTTGACAAAAAAGCATCCTTGTTTTCGAGTACTTTTTTGCGATTTTGAAAATGCAATTCCTCAATTGCTTAAGCCAATTTGTGAAGGAGATAGTATTAACCATGATCTTCAAGAAGATGTGATCACAACACTTCTCAATATCTCAATTCATGACAACAATAAGAAACTCGTAGCCGAAACTCCAATGGTAATTCCAATTCTTATGAAGGCATTGAGATGTGGAACAATCGAGACACGAGCCAATGCTGCAGCAACCCTTTTCACGTTATCAGCACTAGACTCAAACAAAGAACTTATAGGAAAATCGAATGCCTTAAAACCGCTTATCGACCTATTAGAAGAAGGTAATCCCTTAGCCATGAAAGATGTTGCTTCAGCAATTTTCACTTTATGTATGATGCATGACAACAAAGCAAGAGCAGTGAAAGACGGCGCAGTTAGAGTCATTATGACGAAGATGAAAAACCGAGTTCACGTCGATGAATTACTAGCTATCCTTGCGCTACTTTCGACTCATCAGAAGGCTGTTCTTGAAATGGCTGAGCTCGGAGCTGTTCCTTGCTTGCTAAGCATCATGCGAGAGAGCTCGTGCGAACGTAATAAGGAGAATTGCGTAGCGGTCCTTCAAACTATATGTCTTTATGATAGATCCAAGTTGAGGGAAATAAAGGAAGAGGAGAATAGTTACAGAACAATATCTGAACTTGCAAAGAGTGGAACTTCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGGTTGCATAGGGTTGTTAATATCACACACACTGCATAA 1374 0.3683 MAKPGVLDSDPEIMVKKALELKKELKKLVKSIVDDEDINIEAIEKAKEILCVLKDLKLRKKSQSSMSFKINKNVTFPDEFKCPLSNELMRDPVIVSSGQTYDRPFIQKWINAGNRTCPQTHQILSHTFLTPNHLIREMIEKWSKNQGLELCNVISYINDEGAKEADQNHFLCLLEKMSSTLSDKKEAAKQLRLLTKKHPCFRVLFCDFENAIPQLLKPICEGDSINHDLQEDVITTLLNISIHDNNKKLVAETPMVIPILMKALRCGTIETRANAAATLFTLSALDSNKELIGKSNALKPLIDLLEEGNPLAMKDVASAIFTLCMMHDNKARAVKDGAVRVIMTKMKNRVHVDELLAILALLSTHQKAVLEMAELGAVPCLLSIMRESSCERNKENCVAVLQTICLYDRSKLREIKEEENSYRTISELAKSGTSRAKRKASGILERLHRVVNITHTA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01067 457 SUPERFAMILY ARM repeat 178 447 IPR016024 -
Trre13g01067 457 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Trre13g01067 457 SMART arm_5 365 406 IPR000225 GO:0005515
Trre13g01067 457 SMART arm_5 243 284 IPR000225 GO:0005515
Trre13g01067 457 SMART arm_5 285 325 IPR000225 GO:0005515
Trre13g01067 457 FunFam RING-type E3 ubiquitin transferase 352 453 - -
Trre13g01067 457 CDD RING-Ubox_PUB 77 129 IPR045210 -
Trre13g01067 457 Gene3D - 150 452 IPR011989 -
Trre13g01067 457 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Trre13g01067 457 PANTHER U BOX DOMAIN-CONTAINING 42 446 - -
Trre13g01067 457 FunFam RING-type E3 ubiquitin transferase 76 148 - -
Trre13g01067 457 SUPERFAMILY RING/U-box 75 152 - -
Trre13g01067 457 Pfam U-box domain 77 145 IPR003613 GO:0004842|GO:0016567
Trre13g01067 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01067 Trre-Chr13 8482873 8485496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01067 138 457 U-box Gene Family AT3G07360 60.000 1.05e-127 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01067 - - gmx:100777031 692.189