Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01064 ATGAATTACGGCGGCGAAACGTTGGACTTCCGAAACCTTAAGGTAATATCCGCCGTTGGACGCGGTGCAAAGGGTGTCGTGTTCCTAGCAAGAACCTATGGATCATCGAAAGATGAATGGTGGGCATTGAAAGTTATATCAAAAGAACTTCTTCAGAAGAAAAACAATAACAAAACTGGTGAATGCAAAAGGGTAAGATTTGAACAACAAATACTACGTCGTTTTGATCATCCTCTTTTGCCACGGTTAAAAGGTGTTCTTGAAACTGAGAAACTTATTGGATTCGCCATTGATTATTGTCATGGTGGCAGTTTGCATTCTCTTATGAAGAAACAACCGGACAAAAAATTCTCTGAAGAAACCATTAGGTTCTATGCTGTGGAATTGGTGTTAGCGTTGGAGTATTTACACAAACTAGGAGTAGTTTATAGAGATTTAAAGCCTGAGAACATCATGATTCAAGAAACAGGTCACATAATGCTCGTAGATTTCGACTTATCAAAGAAACTGAATCCAAAATCACCAAACTCACTGAGTTGCAACTCGTCACCAGGTTCCAAATCGCCAGATATGAACACAAGAAAAACGAGATGGTTAACAAAGCTCTATTTTCATTGTCATTCCGGGTTACCAAAATATGACACAGTGAATCAACTCGATTTTAACTCGCCGTTTAAAAGGAGTGAGTCAGACTCAGTTGAAAAGTCAAACTCGTTTGTGGGAACCGAGGATTACGTGGCACCTGAAGTTATTTCAGGTCATGGACACAATTTAAGTGTTGATTGGTGGTCATACGGCGTCGTTTTATATGAGATGTTTTACGGAACGACGCCGTTTAATAGTTCAAATAGGAAGGAAACATTTCACAAGATTTTAAATAGTGAGCTTGAACAAAAGGGTGAAACGACGCCGTTGAAGGATTTGATTGCTAAATTGCTTGAGAAAGATCCTGACCGTAGGATTCAGGTTGATGAAATAAAGGGTCATGATTTCTTTAAAGGTGTGAAATGGGATACGGTGTTGGAAATTGCACGTCCACCGTATATTCCTCAGAATGAAGTTGTGGACAAAGCTGGGTTTTCTAGAAGAGATGTTGAGTCTTTTGTCCATGGAATATTTTTTCCAAAGAATAAAAATGATAATGGTGAGAAAGAGAAAAATAAGGAGGAAGTGAAAAAAGATGGAAAGGAGAAGGAAAATGGGAATGATGATAGTAGTAATAATAAGAATGTGTGGGTTGAGAAGTTGAGTCAGCAGATTAAGGATGAGAATTTTTTAATTTTTTGA 1287 0.3815 MNYGGETLDFRNLKVISAVGRGAKGVVFLARTYGSSKDEWWALKVISKELLQKKNNNKTGECKRVRFEQQILRRFDHPLLPRLKGVLETEKLIGFAIDYCHGGSLHSLMKKQPDKKFSEETIRFYAVELVLALEYLHKLGVVYRDLKPENIMIQETGHIMLVDFDLSKKLNPKSPNSLSCNSSPGSKSPDMNTRKTRWLTKLYFHCHSGLPKYDTVNQLDFNSPFKRSESDSVEKSNSFVGTEDYVAPEVISGHGHNLSVDWWSYGVVLYEMFYGTTPFNSSNRKETFHKILNSELEQKGETTPLKDLIAKLLEKDPDRRIQVDEIKGHDFFKGVKWDTVLEIARPPYIPQNEVVDKAGFSRRDVESFVHGIFFPKNKNDNGEKEKNKEEVKKDGKEKENGNDDSSNNKNVWVEKLSQQIKDENFLIF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01064 428 FunFam Serine/threonine-protein kinase OXI1 104 172 - -
Trre13g01064 428 PANTHER FLIPPASE KINASE 1-RELATED 8 357 - -
Trre13g01064 428 ProSiteProfiles Protein kinase domain profile. 13 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01064 428 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Trre13g01064 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Trre13g01064 428 Pfam Protein kinase domain 234 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01064 428 Pfam Protein kinase domain 15 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01064 428 SUPERFAMILY Protein kinase-like (PK-like) 12 357 IPR011009 -
Trre13g01064 428 ProSiteProfiles AGC-kinase C-terminal domain profile. 333 428 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre13g01064 428 MobiDBLite consensus disorder prediction 377 404 - -
Trre13g01064 428 MobiDBLite consensus disorder prediction 376 411 - -
Trre13g01064 428 Coils Coil 379 399 - -
Trre13g01064 428 SMART serkin_6 13 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01064 428 FunFam Serine/threonine-protein kinase OXI1 234 351 - -
Trre13g01064 428 Gene3D Transferase(Phosphotransferase) domain 1 104 189 - -
Trre13g01064 428 Gene3D Transferase(Phosphotransferase) domain 1 231 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01064 Trre-Chr13 8465550 8467401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01064 7 381 AGC Kinase Gene Family AT4G13000 56.117 1.09e-136 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre13g01064 Pkinase 1.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01064 K20714 - gmx:100813693 549.28