Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01047 ATGATAAATTTCCATCTAGAATTTTTATCCCTGAGTATTAATTTAGGTAAAATCTTTGAAGACAAAGAAGCTGTAAAAATGATCAACAATGATCACTATTTATTTAATCTTGGTAATTGCAATGTCTTTGGCTACTATACCATTAATGTTGATCACTATGGTAATGTCGAAAGATTTATTAATCATGGTTGTTTTCTAAATTTGTTTTATCAAAGAGTTTTTTATGATCACGATGATGGTAGGATTCCCCACATGATGCTATTTGCAGCCAAGGATATTCCAAAAATGCAAGAACTGACTTTGGATTACCATTACGAAATTGATCAAGTGATTGATTCAAACGGAAAGGTAAAGAAGAAGAAATGCTATTATGGTGCTTTGGAATGTTGTGGTAGGTTTGTATTATTCAAGACTTCTAGTAAAAGGTGA 429 0.31 MINFHLEFLSLSINLGKIFEDKEAVKMINNDHYLFNLGNCNVFGYYTINVDHYGNVERFINHGCFLNLFYQRVFYDHDDGRIPHMMLFAAKDIPKMQELTLDYHYEIDQVIDSNGKVKKKKCYYGALECCGRFVLFKTSSKR 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01047 142 ProSiteProfiles SET domain profile. 1 104 IPR001214 GO:0005515
Trre13g01047 142 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 123 - -
Trre13g01047 142 Pfam SET domain 43 103 IPR001214 GO:0005515
Trre13g01047 142 Gene3D SET domain 11 133 IPR046341 -
Trre13g01047 142 SUPERFAMILY SET domain 16 109 IPR046341 -
Trre13g01047 142 SMART set_7 2 110 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01047 Trre-Chr13 8348502 8348930 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01047 46 133 EF-hand Containing Proteins AT5G13960 48.864 5.19e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre13g01047 SET 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01047 - K11420 psat:127129315 153.295