Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01044 ATGGAGGCTCTCAACAATGGTGAAATTGAAACACAAGAATATTTTGTCCCAACAAAAGTGAGTTCTAGGCTTAAAAATCAGCCAAAGATTCATGATGACATTTACCACAAGAGTGGTAACAAGTCTGTTGAAAAGAGAGATATGAATTTTGAAGAGTATTCTATTGAGAAGAGAACAAAGCTTGACCCCTTTGTGCAAAATCAAGCATTGGTTTCAAAAATAGATAAAAGTGGTTTATTTGTTTTTGATGAACTTGACATGAGAGGCCTTTTGTCCTTAAAAGAAACCTTCAGACTTGCCAATCTTCGTAGTCTTGCTAAGAAAGAGAAGAATCAATGTAAGAATCAACGAAAGATGATGCGTGATAAGAAGAGTGTTGACACATCTTTTATGACTAGCAAGGTTGATAAAAATGGCATTGAAGGTGAGTACATTCCAGGACTCACGACATCAAGATATCTAATCAATAAGCTTCAAGAACTGGCTAAAGCTGGCATGGATAAGGTTAATTTTATGAAAGGACAAGTCTCTATAGCTCTTTCTTCTTCTCCAAGTTTGGTATGCAAGGATATTAGTGATGGACAAGAAGCTATCAACATAATTGCAACAAATGAATTCGATGATCCTCCAGTTGCACCTACAGGTTTTACATATATTATATCAAATCAAGTTGCAAAACACGTTAAAGTTCCATCCAGGACTTCTGGATGTCATTGCCAAGGAAGTTGTAGAAATATTAAAACGTGCTCTTGTGTTAATTATCTTAAAGGCTCTAAGTTTCCATATAATAATGGCAGATTGATTGAGCCTCGAGATATCATAGTCGAATGTGGGCCACAATGTGGATGTGGACCTAATTGTGAAAATAAAATTTCTCAAAAGGGTTTGAAATATCGACTTGAAGTTTATCGTACCACCCAAAAAGGTTGGGCTGTGAGAACATGGGACTTTATTCCCTCAGGTGCACCAGTAGTAGAGTATATTGGTGTAATTGATAGGGATGATAAGTTAGATAATTCTGTTGAAAATGACTACATATTTGACATTGATTGTTTGCACACAATTAATGGGATAGATGGAAGAGAGCAACGGTTGGGTGGTGTATCACTCCCTACTAAAGAAATTTCTAAAAAAAGGGACAAGTATCTGAAAAATGATCCAGAATTTTGTATAGATGCTGGTTCTTTTGGTAATGTTTCAAGATTTATTAATCATGGATGTTCACCAAACCTCTTTGTACAATGTGTTCTCAGTAATCACCTAGATGTTAAACTAGCTCGTGTGGTCTTATTTGCAGCAAAAGACATACCTCCCTATCAGGAGCTCACCTATGACTATGGTTATAGACTTGATAGTGTGGTTGGTCCTGATGGAAATATTAAGCAATTGCAATGTCATTGTGGTGCAAAGGAATGTCGTAAGCGCTTGTACTAA 1434 0.3633 MEALNNGEIETQEYFVPTKVSSRLKNQPKIHDDIYHKSGNKSVEKRDMNFEEYSIEKRTKLDPFVQNQALVSKIDKSGLFVFDELDMRGLLSLKETFRLANLRSLAKKEKNQCKNQRKMMRDKKSVDTSFMTSKVDKNGIEGEYIPGLTTSRYLINKLQELAKAGMDKVNFMKGQVSIALSSSPSLVCKDISDGQEAINIIATNEFDDPPVAPTGFTYIISNQVAKHVKVPSRTSGCHCQGSCRNIKTCSCVNYLKGSKFPYNNGRLIEPRDIIVECGPQCGCGPNCENKISQKGLKYRLEVYRTTQKGWAVRTWDFIPSGAPVVEYIGVIDRDDKLDNSVENDYIFDIDCLHTINGIDGREQRLGGVSLPTKEISKKRDKYLKNDPEFCIDAGSFGNVSRFINHGCSPNLFVQCVLSNHLDVKLARVVLFAAKDIPPYQELTYDYGYRLDSVVGPDGNIKQLQCHCGAKECRKRLY 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01044 477 ProSiteProfiles Post-SET domain profile. 461 477 IPR003616 -
Trre13g01044 477 SMART PostSET_3 461 477 IPR003616 -
Trre13g01044 477 SUPERFAMILY SET domain 183 453 IPR046341 -
Trre13g01044 477 ProSiteProfiles Pre-SET domain profile. 235 295 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g01044 477 ProSiteProfiles SET domain profile. 298 447 IPR001214 GO:0005515
Trre13g01044 477 Coils Coil 99 119 - -
Trre13g01044 477 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 63 471 - -
Trre13g01044 477 SMART preset_2 188 282 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g01044 477 Pfam Pre-SET motif 191 290 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre13g01044 477 SMART set_7 298 453 IPR001214 GO:0005515
Trre13g01044 477 Gene3D SET domain 181 477 IPR046341 -
Trre13g01044 477 Pfam SET domain 309 447 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01044 Trre-Chr13 8323725 8328288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01044 145 477 EF-hand Containing Proteins AT5G13960 54.142 6.76e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre13g01044 SET 4.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01044 K11420 - tpra:123892021 865.529