Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01025 ATGGCTTCTTCCAGGAGGATCAACTATGCCACTAACAGAGGAGGTTTTTTGACTGCCTACATTCCTGGCGAGCCTCATGGAGAGATGAATCCAAAATTTGTCAGGGAGGTTTTCAATGAACTGAAGGACATTATTGTACTGGTAGACAGATCTAACCGTAGTCTCAAAGTTCAGTTCAATAAATCAAAGGAACACCCTATGTTTGTTGCTGGTTGGTCAGAAGTTGGACCATTTTTTGGATTTGAAGAAAGCAAGCTGATCCTCATGACTTATGTTGGTAAGAATCGATTCATTCTTGATTTCCTACCTGAGCCATTTGACCCAAACAGCTTACCAACATGGCATTCCTACAAATATTCTCACAATGAACCTATCTCATTCGAGGTCGAACTCACCAACTATCTAGCAACAGGATCACAGTTGACTTTGAAAAAGAATTTTGCTGACTACGTTAGAGCAACTAAATTCAAAACCGTCATCCTCATTGGTCCACTCGGTGATGAAATAGAGTGCAAGCTTCTGATCAAGACGACTAAAATGAAGAAATCGGTCAAGATTGGTGAAGGTTGGATGGAGTTTGTTGAAAGGAATGGCTTCAATAAGGGAGACATCCTCAATTTCAAATTTATCAACAAGCAGGAGCACAATCTGGTGAATGTGTTTCAATATCAACCTTAG 678 0.4027 MASSRRINYATNRGGFLTAYIPGEPHGEMNPKFVREVFNELKDIIVLVDRSNRSLKVQFNKSKEHPMFVAGWSEVGPFFGFEESKLILMTYVGKNRFILDFLPEPFDPNSLPTWHSYKYSHNEPISFEVELTNYLATGSQLTLKKNFADYVRATKFKTVILIGPLGDEIECKLLIKTTKMKKSVKIGEGWMEFVERNGFNKGDILNFKFINKQEHNLVNVFQYQP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01025 225 Gene3D - 119 224 IPR015300 -
Trre13g01025 225 Gene3D - 13 102 IPR015300 -
Trre13g01025 225 CDD B3_DNA 126 221 IPR003340 GO:0003677
Trre13g01025 225 Pfam B3 DNA binding domain 129 221 IPR003340 GO:0003677
Trre13g01025 225 SUPERFAMILY DNA-binding pseudobarrel domain 32 98 IPR015300 -
Trre13g01025 225 ProSiteProfiles B3 DNA-binding domain profile. 126 224 IPR003340 GO:0003677
Trre13g01025 225 SUPERFAMILY DNA-binding pseudobarrel domain 123 221 IPR015300 -
Trre13g01025 225 SMART B3_2 127 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01025 Trre-Chr13 8220203 8221129 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g01025 B3 3.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01025 - K01540 tpra:123900141 249.21