Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01024 ATGGCTTCTTCCAGGAGGATCAACTATGCCACTAACAGAGGAGGTTTTTTGACTGCCTACATTCCTGGCGAGACTTTGAAAAAGAATTTTGCTGACTACGTTAGAGCAACTAAATTCAAAACCGTCATCCTCATTGGTCCACTCGGTGATGAAATAGAGTGCAAGCTTCTGATCAAGACGACTAAAATGAAGAAATCGGTCAAGATTGGTGAAGGTTGGATGGAGTTTGTTGAAAGGAATGGCTTCAATAAGGGAGACATCCTCAATTTCAAATTTATCAACAAGCAGGAGCACAATCTGGTGAATGTGTTTCAATATCAACCTTAG 327 0.4067 MASSRRINYATNRGGFLTAYIPGETLKKNFADYVRATKFKTVILIGPLGDEIECKLLIKTTKMKKSVKIGEGWMEFVERNGFNKGDILNFKFINKQEHNLVNVFQYQP 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01024 108 Gene3D - 10 107 IPR015300 -
Trre13g01024 108 SUPERFAMILY DNA-binding pseudobarrel domain 26 104 IPR015300 -
Trre13g01024 108 Pfam B3 DNA binding domain 20 104 IPR003340 GO:0003677
Trre13g01024 108 ProSiteProfiles B3 DNA-binding domain profile. 26 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01024 Trre-Chr13 8220203 8221129 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g01024 B3 1.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01024 - K17797 tpra:123892179 75.0997