Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01019 ATGGTCAAATTAATGGTCTACTTGTGCTTGATCTTGCTTCACATTTTCTTGAGCATTGTTCAAATTCAATCAGCACCAAAAGAGTCTCTCATAACCAAGCTTCCTGGCTTCAGTGGTATTATACCTTCAAAGCACTATGCTGGGTATGTGACAGTGGATGAAAATCATGGAAGAAACTTGTATTACTATTTTGTTGAATCACAAGGTAATCCATCAAAAGACCCTGTGGTTCTATGGCTTAATGGTGGTCCTGCATGTTCTAGCTTTGATGGATTCATATATGAGCATGGTCCTTTTAATTTTATTAAACCAAAGACTAAAGGAGCTTTGCCTACATTGCAACTAAATCCGTACAGCTGGTCAAAGGTTTCCAATATTATATATTTGGACTCTCCTGCTGGAACTGGATTTTCATATTCAAAGAATGTATCTGATTACAAAACTGGTGATATAAGAACTGCTTCTGATACTCATACTTTTCTCCTCAAGTGGTTTAAATTATACCCTGAGTTCCTTGCCAATCCATTATTCATTGCTGGAGAGTCTTATGGTGGAGTTTATGTGCCTACTCTTGCTGATAAAATAGTACAAGGAATTGAAGCTGGTACTAAGCCCAAATTGAATTTCAAGGGTTATATGGTTGGAAATCCAGTTACTGATCATAAATTTGATGACAATTCTCTTGTTCCTTTCGCACATGGAATGGGTCTTATCTCTGATCAAATATTTGAGGATGTAACAAAAGATTGTAGGGGGAAATTCTATGAATCAGACAGTGTTGCTTGCTCACATCAGTTGTCAAAAGTTGATAAGGTACTAAAAAAGGTAAACGTATATGACATTTTGGAACCATGTTATCATGGTGGAGAGAATGAGGAGAATCAAAAACTGCCATTAAGTTTTAGGCAGTTGGGTAAAACTGATAGACCTATGGCTGTGAGGAAAAGAATGTATGGTCGTGCTTGGCCCTACAAAGTTTCTGTGAAAGATGGAATTGTACCAACTTGGCCACAACTCAATATCTATGTTCCTTGCATTGATGACGAGGTTTCGGTTAAATGGCTCAATAATCACGAGGTCCGAAAAGCTATTCACACTGTGGGGGAAAATGTGGTGAAGGAATGGGTCTTATGTACAGGCGACGAAGTTAAATACACTCATGATACCGGGAGCATGATTCCGTACCACAAGAAACTAACTTCAAAAGGATATCGCGTTTTAGTTTACAGTGGTGATCATGACATGTGTGTCCCATATACTGGAACTGAAGCATGGACAAGATCAATTGGATATAAAATTGTAGATGAATGGAGGGCTTGGTCAGTCAATGATCAAGTTGCTGGGTTTATACAAGGCTATGCCAACAATTTCACATTTCTGACAGTAAAGGGGTCTGGGCATACTGTTCCAGAATATAAACCACAGGAAGCATTGTATTTTTATCAACATTTTATAAATGGGCTGTCTATATAG 1473 0.3809 MVKLMVYLCLILLHIFLSIVQIQSAPKESLITKLPGFSGIIPSKHYAGYVTVDENHGRNLYYYFVESQGNPSKDPVVLWLNGGPACSSFDGFIYEHGPFNFIKPKTKGALPTLQLNPYSWSKVSNIIYLDSPAGTGFSYSKNVSDYKTGDIRTASDTHTFLLKWFKLYPEFLANPLFIAGESYGGVYVPTLADKIVQGIEAGTKPKLNFKGYMVGNPVTDHKFDDNSLVPFAHGMGLISDQIFEDVTKDCRGKFYESDSVACSHQLSKVDKVLKKVNVYDILEPCYHGGENEENQKLPLSFRQLGKTDRPMAVRKRMYGRAWPYKVSVKDGIVPTWPQLNIYVPCIDDEVSVKWLNNHEVRKAIHTVGENVVKEWVLCTGDEVKYTHDTGSMIPYHKKLTSKGYRVLVYSGDHDMCVPYTGTEAWTRSIGYKIVDEWRAWSVNDQVAGFIQGYANNFTFLTVKGSGHTVPEYKPQEALYFYQHFINGLSI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01019 490 ProSitePatterns Serine carboxypeptidases, histidine active site. 457 474 IPR033124 GO:0004185
Trre13g01019 490 FunFam Carboxypeptidase 344 489 - -
Trre13g01019 490 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 474 IPR001563 GO:0004185|GO:0006508
Trre13g01019 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Trre13g01019 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Trre13g01019 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 457 470 IPR001563 GO:0004185|GO:0006508
Trre13g01019 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Trre13g01019 490 Pfam Serine carboxypeptidase 35 487 IPR001563 GO:0004185|GO:0006508
Trre13g01019 490 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Trre13g01019 490 Gene3D alpha/beta hydrolase 23 301 IPR029058 -
Trre13g01019 490 FunFam Carboxypeptidase 392 487 - -
Trre13g01019 490 SUPERFAMILY alpha/beta-Hydrolases 31 488 IPR029058 -
Trre13g01019 490 FunFam Carboxypeptidase 24 304 - -
Trre13g01019 490 Gene3D - 341 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01019 Trre-Chr13 8186208 8193047 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01019 350 487 Calmodulin-binding Proteins AT2G22960 44.203 1.17e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01019 K16296 - gmx:100792057 733.406