Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01009 ATGGGTGGTGTGGATAGTAGAAAGTTGATAGGTTTATTTAAGAAGAAAAATAAGAACAAGAATGGGTCTATATGGTCCATTTTCATGCATGCTGATGTGGAAGATTGGTTCCTTATGGTTTTAGGTACCATTGGAGCAATTGGTGAAGGATTCACTTTTCCTTTGATTTTATATATTAGTAGCCGCATGATCAATAATATTGGAAGTTCATCTACCATGGAACCAGACACTTTCATCCATAACATCAATAAGAATGCACTTGCTTGGTTATATTTGGCCTGTGCATCTTTTGTTATTTGTTTCCTTGAGGGTTATTGTTGGACAAGGACAAGTGGGAGACAAGCTACAAGAATGAGATGCAAGTATCTTAAAGCAGTTCTTAGACAAGAAGTTTCGTACTTTGATTTGCAGGTCACAAGTACCTCAGAAATCATCACTAGTGTCTCTAATGACACTCTTATAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTGTTGATGAACATTTCATTGTTCATTGGGAGCTATATAGTGGCATTTACAATGCTATGGAGATTGGCAATTGTAGTATTCCCATTTTTAATTCTTCTAGTGATCCCTGGATTAATCTATGGCATAACATTGATGAGTTTATCAAGCAAGATTAGGGAAGAGTACAATCAAGCTGACAAAATAGTAGAACAAACAATATCTTCCATTAGAACTGTTTATTCATTTGTTGGAGAAAACAAATCTATGATTGCTTTCTCTAATGCATTACAAGGGACTGTTAATTTGGGATTAAAACAAGGATTAGCTAAAGGTTTAGCTATTGGAAGCAATGGTTTTGTGTTTGCAATTTGGTCTTTCATGTGCTATTATGGAAGTAGATTGGTGATGTACCATGGTGCTAAAGGAGGGACAGTTTTTGCTGTTGGAGCAACCATAGCACTTGGTGGATTAGGATTAGGATCAAGTTTATCAAGCCTAAGAAATTTCTCAGAAGCAAGTTCAGCAGGTGAAAGAATCAAGAAAGTAATATCAAGAATTCCAAACATAGATTCCAACAATACAAAAGGAGAAATATTAGAAAAAATTTCAGGAGAAGTTGAATTTAACAACATAGAATTTGCATATCCAACAAGACCAGAAACAATTATCCTTAAAAACTTATGTCTCAAAATTCCAGCTGGAAAAACAGTAGCATTGGTTGGTGAAAGTGGTTCAGGAAAATCAACATTGATAGCATTATTGCAAAGATTTTATGATCCAATTGGTGGTGAAATACTTGTTGATGGTGTTGCTATAAATAAGTTGAATATTAAGTGGCTAAGGTCAATTATGGGGTTGGTTAATCAACAACCTTCTCTATTTGCAACAAGTATTAAAGAGAATATAATTTTTGGTAAGGAAGATGCTACTGAGGATGATATTGTTGAAGCTGCTAGAATTTGTAATGCTCATGATTTCATTTCATTGCTTCCTCAAGGTTACAATACTCAGGTGGGAGAAAGTGGAGTTCAATTATCAGGTGGACAAAAACAAAGGATAGCAATTGCTCGAGCAATAATAAAAAAGCCAAGGCTCCTTCTTTTGGATGAAGCAACAAGCGCTTTAGACACTAAATCAGAACGACTTGTTCAACAAGCACTCGATAATGCAACAATCGGCTGCACCACCATCGTAATCGCCCACCGCCTCTCCACAATCCAAAATGCCAACATAATTGCCGTCGTGCATGGTGGAAAAATCACTGAGATTGGCTCACATAACGAACTTCTTCAAAACAACACCGGCGTCTACTCCTCTCTTGTCCACAACCAACAAACTGACGAGGGAGGAGTTGAAGAAGAAAATGTTATAACTACTTCCACTAAAACGGACCAAGAGACCACGTGGTTTGTGGACCATACCATTTTAGCGGAAGAAGAAAAAAATAATATTAATAATGTGAATGTCAATGAAGGTAATACAGTGTCGTTTTGGAGAATACTTTTGTTAAATGCTCCTGAATGGAAACAAGCAGTTTTTGGGTGTTTGAATGCAATGGTGTTTGGTGCGATTCAACCGGTTTATGCATATGCAATGGGTTCATTGATATTTATTTATTTTGATACGGATTATGAGGAGATAAAAAACAAGACTAAGGTCTATTCACTTTGCTTTTTGGGTCTCTTTGTGATAACTTTGGTGGTTAATGTTGGACAACATTATAACTTTGCATATATGGGAGAGTATTTGACTAAACGTGTAAGGGAAATGATGCTTTCTAAGATAATCACTTTTGAAGTTGCTTGGTTTGATCGTGATGAAAATTCTAGTGGTGCTATTTGTTCTCGACTTGCTAATGATGCTAATGTGGTGAGGTCCTTAGTTGGTGATAGAATGTCTTTGTTGGTACAAACTTTCTCAGCAGTAGTGACAGCATACACTATGGGTCTAGTCATTTCATGGAGGCTAAACATTGTTATGATATCTATTCAACCAATTTTAATAGCTTGCTTTTATACAAGAAGTGTGTTACTCAAAAGCATGTCAAGCAAGTCCACTAAGGCCCAACAAGAAAGTAGCAAGTTAGCTTGTGAAGCCGTTTCAAATCTTAGAACCATCACTGCCTTTTCTTCTCAAGAAAGAATACTCAAAATGCTTGAAATGGCCCAACAAGGCCCAATTCAAGAGAATTTTCGACAATCGTGGTTCGCGGGTATTGGACTTGGGCTTTCACAATTTCTTATGTCTTGTACTTGGGCCGTGAATTATTGGTATGGCGGTAAGCTTATCGTTGATGGGTACATAACAAAGAAAGCGTTGTTTGAGAGCTTTATGGTTGTGGTGAGTACAGGACGGGTTATAGCCGATGCTGGAAGCATGACTAAAGACCTTGTCAAAGGTGCTGATGTTGTGAGCTCCATTTTTGCCATCTTAGACCGACATACAAAAATCGAGCCAGATGACCCTGGTGGGTTTAAGCCCGAGACTTTAATGGGCCAACTAGAATTTTGCGACGTGCATTTTTCATACCCTGCTAGGCCCAATGTAGTTATCTTTAAAGATTTTTCAATCAAAATTGAAGCGGGGAAATCAACGGCATTAGTGGGCCAAAGTGGGTCCGGAAAATCAACCATCATTGCATTAATCGAGAGATTCTATGACCCGTTTAAAGGAAGTGTGACAATTGATGGTATGAACATAAAATCATATAACCTAAAGTCACTAAGAAAACATATAGCACTTGTGAGCCAAGAGCCAATATTATTTAATGGGACCATAAGAGACAACATTGCATATGGAACAACATGTGACAACATTGATGAAATTGAGATCATAGAGGCAGCAAGAGTAGCCAATGCTCATGATTTCATATCTAGCTTGAAAGATGGGTATGGAACATGGTGTGGTGACAAAGGGGTGCAACTTTCAGGAGGTCAAAAACAAAGGATAGCAATAGCTAGAGCCATGTTGAAGAATCCAAAGGTATTGCTACTAGATGAGGCAACAAGTGCACTAGATAATAATTCAGAAAAGGTAGTGCAAGATGCATTGAATAAGGTAATGGTGGGAAGAACAAGTGTGGTTGTGGCACATAGGTTGAGTACCATACACAATTGTGATGCTATTGCTGTTTTAGATAAAGGGAAAATGGTTGAGTTTGGAAGTCACAAAACTTTGTTGGCTAAAGGACCTTGTGGTGTTTATTACTCTTTGGTACATCTTCAAACTAAACATGTATCTACAACCAAAGACACTACTAATTTAGGTAAATAG 3747 0.3739 MGGVDSRKLIGLFKKKNKNKNGSIWSIFMHADVEDWFLMVLGTIGAIGEGFTFPLILYISSRMINNIGSSSTMEPDTFIHNINKNALAWLYLACASFVICFLEGYCWTRTSGRQATRMRCKYLKAVLRQEVSYFDLQVTSTSEIITSVSNDTLIIQDVLSEKVPNLLMNISLFIGSYIVAFTMLWRLAIVVFPFLILLVIPGLIYGITLMSLSSKIREEYNQADKIVEQTISSIRTVYSFVGENKSMIAFSNALQGTVNLGLKQGLAKGLAIGSNGFVFAIWSFMCYYGSRLVMYHGAKGGTVFAVGATIALGGLGLGSSLSSLRNFSEASSAGERIKKVISRIPNIDSNNTKGEILEKISGEVEFNNIEFAYPTRPETIILKNLCLKIPAGKTVALVGESGSGKSTLIALLQRFYDPIGGEILVDGVAINKLNIKWLRSIMGLVNQQPSLFATSIKENIIFGKEDATEDDIVEAARICNAHDFISLLPQGYNTQVGESGVQLSGGQKQRIAIARAIIKKPRLLLLDEATSALDTKSERLVQQALDNATIGCTTIVIAHRLSTIQNANIIAVVHGGKITEIGSHNELLQNNTGVYSSLVHNQQTDEGGVEEENVITTSTKTDQETTWFVDHTILAEEEKNNINNVNVNEGNTVSFWRILLLNAPEWKQAVFGCLNAMVFGAIQPVYAYAMGSLIFIYFDTDYEEIKNKTKVYSLCFLGLFVITLVVNVGQHYNFAYMGEYLTKRVREMMLSKIITFEVAWFDRDENSSGAICSRLANDANVVRSLVGDRMSLLVQTFSAVVTAYTMGLVISWRLNIVMISIQPILIACFYTRSVLLKSMSSKSTKAQQESSKLACEAVSNLRTITAFSSQERILKMLEMAQQGPIQENFRQSWFAGIGLGLSQFLMSCTWAVNYWYGGKLIVDGYITKKALFESFMVVVSTGRVIADAGSMTKDLVKGADVVSSIFAILDRHTKIEPDDPGGFKPETLMGQLEFCDVHFSYPARPNVVIFKDFSIKIEAGKSTALVGQSGSGKSTIIALIERFYDPFKGSVTIDGMNIKSYNLKSLRKHIALVSQEPILFNGTIRDNIAYGTTCDNIDEIEIIEAARVANAHDFISSLKDGYGTWCGDKGVQLSGGQKQRIAIARAMLKNPKVLLLDEATSALDNNSEKVVQDALNKVMVGRTSVVVAHRLSTIHNCDAIAVLDKGKMVEFGSHKTLLAKGPCGVYYSLVHLQTKHVSTTKDTTNLGK 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01009 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1230 IPR003439 GO:0005524
Trre13g01009 1248 SMART AAA_5 1019 1213 IPR003593 GO:0016887
Trre13g01009 1248 SMART AAA_5 391 579 IPR003593 GO:0016887
Trre13g01009 1248 Pfam ABC transporter 1011 1161 IPR003439 GO:0005524
Trre13g01009 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g01009 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1233 IPR027417 -
Trre13g01009 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 659 975 - -
Trre13g01009 1248 PANTHER ABC TRANSPORTER B FAMILY 14 727 IPR039421 -
Trre13g01009 1248 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Trre13g01009 1248 Gene3D ABC transporter type 1, transmembrane domain 26 958 IPR036640 GO:0005524|GO:0016020
Trre13g01009 1248 FunFam Putative ABC transporter B family member 8 634 980 - -
Trre13g01009 1248 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Trre13g01009 1248 Gene3D - 982 1244 IPR027417 -
Trre13g01009 1248 FunFam ABC transporter B family member 4 354 610 - -
Trre13g01009 1248 SUPERFAMILY ABC transporter transmembrane region 33 345 IPR036640 GO:0005524|GO:0016020
Trre13g01009 1248 CDD ABC_MTABC3_MDL1_MDL2 993 1233 - -
Trre13g01009 1248 FunFam ABC transporter B family member 1 26 363 - -
Trre13g01009 1248 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Trre13g01009 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Trre13g01009 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 306 - -
Trre13g01009 1248 Gene3D - 354 617 IPR027417 -
Trre13g01009 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 602 IPR027417 -
Trre13g01009 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 957 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g01009 1248 Pfam ABC transporter transmembrane region 39 306 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g01009 1248 Pfam ABC transporter transmembrane region 672 939 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g01009 1248 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Trre13g01009 1248 SUPERFAMILY ABC transporter transmembrane region 657 977 IPR036640 GO:0005524|GO:0016020
Trre13g01009 1248 FunFam ABC transporter B family member 4 982 1240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01009 Trre-Chr13 8135797 8143797 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01009 18 603 Calmodulin-binding Proteins AT2G36910 34.518 1.84e-103 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01009 K05658 - gmx:100809399 1749.95