Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01007 ATGAACAACTTATCTGGCTCTATTCCTGTGGAAATTGGTAAATTGATCAACATGAAAAATTTAAGGCTTAGTGACAATAGTCTTTCTGGTTTCATTCCTCATGAAATTGGAATGATGAGAAACTTGGTTGAAATTAATTTGTCCAATAACTCTTTATCAGGTGAAATCCCACGTACAATTGGAAACTTAAGCAAGTTACAAAATCTTACCATATTTACAAACCATCTCACTGGGCCACTTCCTACAGAAATCAACATGCTTTTCAATTTGGCATATTTCTTTATATTTGATAACAATTTCATTGGTCAGCTCCCACACAATATTTGCATTGGTGGAAAGTTGAAATACTTTGCTGTTTTGAAAAACAACTTCACTGGTCCTGTTCCTATGAGTTTGAAGAATTGCTCTAGCATTGTAAGAATTAGGCTTGAACAAAACCAACTTTCTGGAAATATAACAAACTACTTTGGTGTGTATCCAAATTTGTACTATATGCAGTTAAGTGGAAATAAGTTTTATGGCCATATTTCACCCGACTGGGGAAAATGTCGAAGCCTGGCGATCCTTAACATCTCCAATAATAACATATCAGGTGGTATACCGCCAGAACTAGGTGAGGCAACCAACTTATATTCACTTGACCTATCTTCGAACTACCTCACCGGAAAAATTCCGAAGGAATTAGGCAACTTGACTTCATTGTCCAAACTTTTGATCAGCAACAACCGTCTTTCAGGAAACATTCCTTTAGAAATAACATCACTAAAGGAACTTGGTACGTTAAATCTTGCGGGAAATGATCTAAGTGGCTATGTCACAAAACAACTTGGATATTTTCCTAGATTATTGAACATGAATTTGAGTCATAACAAATTTAAAGGAAATATTCCTGCTGAGTTTGGCCAATTTAAAGTCATTCAAAGTCTTGATCTCAGTGGTAATTTTTTCGATGGAACAATACCGTTAACACTTGCAAAACTGATATACTTAGAGTCATTGAATATATCACATAATAACCTTTTTGGATTTATTCCCTCGAACTTTGATCAGATGCTCAGCTTGTTATCTGTTGACATATCATTTAATCAATTCGAGGGTCCGATTCCAAACATTCCGGCTTTCAATAAAGCTACCATTGAAGTTTTGAGAAATAATAAAAGATTGTGTGGTAATGTCACTGGCTTGGAGCTTTGTCCAGCATCAAGCAGTACTAGATCTCACAATCATAAGATCAATAAAGTCTTATTGATAAGTTTACCTCTTGCAATTGGAACTCTAATACTAGTATTAGTTTGTTTCAAATTCTCTAATCATCTCTGCAAAACTTCAACCACAAGAGAATATCTAGCTCGAGGGAACGTTATTGATACTCAAAACCTATTTACCATATGGAGTTTTGACGGAAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGATTTCGATGATAAACATCTCATCGGAGTTGGAGGTCATGGAAGTGTTTACAAAGCGGAATTACAGACCGGTCAAGTAGTTGCGGTGAAAAAACTCCATTCAGTAGTAGATGAAGAAAATTCCAACCTAAAATCTTTCACAAGTGAGATCCAAGCTCTGACAGAAATTAGACACCGTAACATTGTCAAGCTGCATGGATTTTGTTTGCATTCTCGAGCTTCGTTTTTGGTCTACGAATTCATGGGAAAAGGAAGTGTAGATAACATTTTAAAAGATGATGATCAAGCAATTGCATTTGACTGGAATAAAAGAGTGAATGTCATTAAAGATTTAGCTAATGCTTTATGTTATATGCATCATCATTGCTCGCCTCCAATTGTTCATCGAGATATATCAAGCAAGAATATACTTCTAAATTCTGAATATGTGGCTCATGTTTCTGACTTCGGAATCGCTAAGCTTCTTAATCCAAACTCAACCAACTGGTCCTCATATGCAGGAACCTTTGGATATGCTGCTCCAGAATATGCATATACAATGAAAGTGAATGAGAAATGTGATGTGTATAGTTTTGGGGTGTTAGCATTGGAAATACTTTTTGGAAAACACCCTGGAGGTTTTATATATCATTCCTCACTATCACCTTTGTGGAAAATTATGGGCAACATACTTGATGATATGTCGTTGACGGATAAGTTGGATAAGCGTCTCCCTCATCCTTTGAATCCTATTGTTAACGAGTTAGTATCAATTGCAAGGATAGCTATAGTCTGCTTGACTGAAAGTTCACAATCTCGCCCTACTATGGAGCAGGTCACCAGAGAACTCGCAATGTCATATTTGTCTACAATAGGTTAG 2298 0.3603 MNNLSGSIPVEIGKLINMKNLRLSDNSLSGFIPHEIGMMRNLVEINLSNNSLSGEIPRTIGNLSKLQNLTIFTNHLTGPLPTEINMLFNLAYFFIFDNNFIGQLPHNICIGGKLKYFAVLKNNFTGPVPMSLKNCSSIVRIRLEQNQLSGNITNYFGVYPNLYYMQLSGNKFYGHISPDWGKCRSLAILNISNNNISGGIPPELGEATNLYSLDLSSNYLTGKIPKELGNLTSLSKLLISNNRLSGNIPLEITSLKELGTLNLAGNDLSGYVTKQLGYFPRLLNMNLSHNKFKGNIPAEFGQFKVIQSLDLSGNFFDGTIPLTLAKLIYLESLNISHNNLFGFIPSNFDQMLSLLSVDISFNQFEGPIPNIPAFNKATIEVLRNNKRLCGNVTGLELCPASSSTRSHNHKINKVLLISLPLAIGTLILVLVCFKFSNHLCKTSTTREYLARGNVIDTQNLFTIWSFDGKMVYENIIEATEDFDDKHLIGVGGHGSVYKAELQTGQVVAVKKLHSVVDEENSNLKSFTSEIQALTEIRHRNIVKLHGFCLHSRASFLVYEFMGKGSVDNILKDDDQAIAFDWNKRVNVIKDLANALCYMHHHCSPPIVHRDISSKNILLNSEYVAHVSDFGIAKLLNPNSTNWSSYAGTFGYAAPEYAYTMKVNEKCDVYSFGVLALEILFGKHPGGFIYHSSLSPLWKIMGNILDDMSLTDKLDKRLPHPLNPIVNELVSIARIAIVCLTESSQSRPTMEQVTRELAMSYLSTIG 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01007 765 Gene3D Transferase(Phosphotransferase) domain 1 561 762 - -
Trre13g01007 765 ProSitePatterns Tyrosine protein kinases specific active-site signature. 606 618 IPR008266 GO:0004672|GO:0006468
Trre13g01007 765 Gene3D Ribonuclease Inhibitor 1 114 IPR032675 -
Trre13g01007 765 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 89 402 - -
Trre13g01007 765 FunFam Leucine-rich repeat receptor protein kinase MSP1 445 560 - -
Trre13g01007 765 ProSiteProfiles Protein kinase domain profile. 482 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01007 765 SUPERFAMILY RNI-like 2 370 - -
Trre13g01007 765 Pfam Leucine Rich Repeat 330 349 IPR001611 GO:0005515
Trre13g01007 765 Pfam Leucine Rich Repeat 209 231 IPR001611 GO:0005515
Trre13g01007 765 Pfam Leucine Rich Repeat 41 63 IPR001611 GO:0005515
Trre13g01007 765 SUPERFAMILY Protein kinase-like (PK-like) 456 756 IPR011009 -
Trre13g01007 765 ProSitePatterns Protein kinases ATP-binding region signature. 488 511 IPR017441 GO:0005524
Trre13g01007 765 PANTHER LEUCINE RICH REPEAT KINASE 2 2 759 - -
Trre13g01007 765 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 80 - -
Trre13g01007 765 Gene3D Phosphorylase Kinase; domain 1 446 560 - -
Trre13g01007 765 Gene3D Ribonuclease Inhibitor 115 407 IPR032675 -
Trre13g01007 765 Pfam Protein kinase domain 483 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01007 765 Coils Coil 516 536 - -
Trre13g01007 765 FunFam MDIS1-interacting receptor like kinase 2 561 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01007 Trre-Chr13 8119663 8122068 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01007 2 654 Receptor kinase-like Gene Family AT4G08850 45.220 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g01007 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01007 - - tpra:123888271 975.311