Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01006 ATGGGTGGTGTGGATAGTAGAAAGTTGATAGGTTTATTTAAGAAGAAAAATAAGAACAAGAATGGGTCTATATGGTCCATTTTCATGCATGCTGATGTGGAAGATTGGTTCCTTATGGTTTTAGGTACCATTGGAGCAATTGGTGAAGGATTCACTTTTCCTTTGATTTTATATATTAGTAGCCGCATGATCAATAATATTGGAAGTTCATCTACCATGGAACCAGACACTTTCATCCATAACATCAATAAGAATGCACTTGCTTGGTTATATTTGGCCTGTGCATCTTTTGTTATTTGTTTCCTTGAGGGTTATTGTTGGACAAGGACAAGTGGGAGACAAGCTACAAGAATGAGATGCAAGTATCTTAAAGCAGTTCTTAGACAAGAAGTTTCGTACTTTGATTTGCAGGTCACAAGTACCTCAGAAATCATCACTAGTGTCTCTAATGACACTCTTATAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTGTTGATGAACATTTCATTGTTCATTGGGAGCTATATAGTGGCATTTACAATGCTATGGAGATTGGCAATTGTAGTATTCCCATTTTTAATTCTTCTAGTGATCCCTGGATTAATCTATGGCATAACATTGATGAGTTTATCAAGCAAGATTAGGGAAGAGTACAATCAAGCTGACAAAATAGTAGAACAAACAATATCTTCCATTAGAACTGTTTATTCATTTGTTGGAGAAAACAAATCTATGATTGCTTTCTCTAATGCATTACAAGGGACTGTTAATTTGGGATTAAAACAAGGATTAGCTAAAGGTTTAGCTATTGGAAGCAATGGTTTTGTGTTTGCAATTTGGTCTTTCATGTGCTATTATGGAAGTAGATTGGTGATGTACCATGGTGCTAAAGGAGGGACAGTTTTTGCTGTTGGAGCAACCATAGCACTTGGTGGATTGTAA 948 0.3565 MGGVDSRKLIGLFKKKNKNKNGSIWSIFMHADVEDWFLMVLGTIGAIGEGFTFPLILYISSRMINNIGSSSTMEPDTFIHNINKNALAWLYLACASFVICFLEGYCWTRTSGRQATRMRCKYLKAVLRQEVSYFDLQVTSTSEIITSVSNDTLIIQDVLSEKVPNLLMNISLFIGSYIVAFTMLWRLAIVVFPFLILLVIPGLIYGITLMSLSSKIREEYNQADKIVEQTISSIRTVYSFVGENKSMIAFSNALQGTVNLGLKQGLAKGLAIGSNGFVFAIWSFMCYYGSRLVMYHGAKGGTVFAVGATIALGGL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01006 315 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g01006 315 SUPERFAMILY ABC transporter transmembrane region 34 307 IPR036640 GO:0005524|GO:0016020
Trre13g01006 315 PANTHER ABC TRANSPORTER B FAMILY 14 314 IPR039421 -
Trre13g01006 315 Pfam ABC transporter transmembrane region 39 306 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre13g01006 315 FunFam ABC transporter B family member 1 26 315 - -
Trre13g01006 315 Gene3D ABC transporter type 1, transmembrane domain 17 315 IPR036640 GO:0005524|GO:0016020
Trre13g01006 315 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01006 Trre-Chr13 8116656 8119442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01006 15 315 Calmodulin-binding Proteins AT2G36910 36.093 2.34e-56 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01006 K05658 - gmx:100809399 471.855