Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01003 ATGGAAAGCCAAACCTTGCTATCTTCATGGACAGGCAACGATTCATGCAACTGGCTAGGAATTACATGTGATGAAGATTACAAATTTGTCTCCAATGTAAATCTCACAAATATGGGATTAAGAGGTACACTTGAAACTCTTAACTTCTCATCACTTTCAAATATCCTCACACTTAATCTTAGTAACAACTTCTTGAATGGAAGTATTCCTACCGATATCGGGGCGTTGTCCAAACTATCCTATCTTGATCTCAGTAACAATGATCTTGCAGGAACAATCCCATATGAAATAACAAAGTTGACCAATCTTCATATTTTATATTTAGATAACAATGTTTTCAATGGTTTCATTCCTAAGGAAATAGGTGCATTAAGAAATCTAAGAGAACTTAGTATTTCGTATGCGAATATCACTGGGACTATTCCTATTTCGGTCAGGAACTTGGCCTTCTTGTCACACTTGAATCTAGGAGGCAACAATCTTATAGGAAACATACCAGAAGAAATTTGGAATTTGAGCAACTTAAAGTACCTAGCAGTTGAAAAAAACAAATTCAATGGTTCTATAATTTCCCAAGATATAGTAAACTTGCATAATCTAGAGACTCTAGATCTTAGCAATAGTGATATTTCCATTATTGGTCCTATCCTAGAAGAATTGTGGAAGTTGAAAAATTTGACATACCTTTCTCTTTCACTTTGCAAAGTCACAGGACATATCCCATCATCTATAGGAAAGTTGGCTAACTTGGTGCATCTAAATTTAGCAAATAACCAAATTTATGGCCACATTCCTAAGGAAATTGGTAAGTCATTGAACCTAAAATTTCTATATCTTTCAATGAACAACTTATCTGGCTCTATTCCTGTGGAAATTGGTAAATTGATCAACATGAAAAATTTAAGGCTTAGTGACAATAGTCTTTCTGGTTTCATTCCTCATGAAATTGGAATGATGAGAAACTTGGTTGAAATTAATTTGTCCAATAACTCTTTATCAGGTGAAATCCCACGTACAATTGGAAACTTAAGCAAGTTACAAAATCTTACCATATTTACAAACCATCTCACTGGGCCACTTCCTACAGAAATCAACATGCTTTTCAATTTGGCATATTTCTTTATATTTGATAACAATTTCATTGGTCAGCTCCCACACAATATTTGCATTGGTGGAAAGTTGAAATACTTTGCTGTTTTGAAAAACAACTTCACTGGTCCTGTTCCTATGAGTTTGAAGAATTGCTCTAGCATTGTAAGAATTAGGCTTGAACAAAACCAACTTTCTGGAAATATAACAAACTACTTTGGTGTGTATCCAAATTTGTACTATATGCAGTTAAGTGGAAATAAGTTTTATGGCCATATTTCACCCGACTGGGGAAAATGTCGAAGCCTGGCGATCCTTAACATCTCCAATAATAACATATCAGGTGGTATACCGCCAGAACTAGGTGAGGCAACCAACTTATATTCACTTGACCTATCTTCGAACTACCTCACCGGAAAAATTCCGAAGGAATTAGGCAACTTGACTTCATTGTCCAAACTTTTGATCAGCAACAACCGTCTTTCAGGAAACATTCCTTTAGAAATAACATCACTAAAGGAACTTGGTACGTTAAATCTTGCGGGAAATGATCTAAGTGGCTATGTCACAAAACAACTTGGATATTTTCCTAGATTATTGAACATGAATTTGAGTCATAACAAATTTAAAGGAAATATTCCTGCTGAGTTTGGCCAATTTAAAGTCATTCAAAGTCTTGATCTCAGTGGTAATTTTTTCGATGGAACAATACCGTTAACACTTGCAAAACTGATATACTTAGAGTCATTGAATATATCACATAATAACCTTTTTGGATTTATTCCCTCGAACTTTGATCAGATGCTCAGCTTGTTATCTGTTGACATATCATTTAATCAATTCGAGGGTCCGATTCCAAACATTCCGGCTTTCAATAAAGCTACCATTGAAGTTTTGAGAAATAATAAAAGATTGTGTGGTAATGTCACTGGCTTGGAGCTTTGTCCAGCATCAAGCAGTACTAGATCTCACAATCATAAGATCAATAAAGTCTTATTGATAAGTTTACCTCTTGCAATTGGAACTCTAATACTAGTATTAGTTTGTTTCAAATTCTCTAATCATCTCTGCAAAACTTCAACCACAAGAGAATATCTAGCTCGAGGGAACGTTATTGATACTCAAAACCTATTTACCATATGGAGTTTTGACGGAAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGATTTCGATGATAAACATCTCATCGGAGTTGGAGGTCATGGAAGTGTTTACAAAGCGGAATTACAGACCGGTCAAGTAGTTGCGGTGAAAAAACTCCATTCAGTAGTAGATGAAGAAAATTCCAACCTAAAATCTTTCACAAGTGAGATCCAAGCTCTGACAGAAATTAGACACCGTAACATTGTCAAGCTGCATGGATTTTGTTTGCATTCTCGAGCTTCGTTTTTGGTCTACGAATTCATGGGAAAAGGAAGTGTAGATAACATTTTAAAAGATGATGATCAAGCAATTGCATTTGACTGGAATAAAAGAGTGAATGTCATTAAAGATTTAGCTAATGCTTTATGTTATATGCATCATCATTGCTCGCCTCCAATTGTTCATCGAGATATATCAAGCAAGAATATACTTCTAAATTCTGAATATGTGGCTCATGTTTCTGACTTCGGAATCGCTAAGCTTCTTAATCCAAACTCAACCAACTGGTCCTCATATGCAGGAACCTTTGGATATGCTGCTCCAGAATATGCATATACAATGAAAGTGAATGAGAAATGTGATGTGTATAGTTTTGGGGTGTTAGCATTGGAAATACTTTTTGGAAAACACCCTGGAGGTTTTATATATCATTCCTCACTATCACCTTTGTGGAAAATTATGGGCAACATACTTGATGATATGTCGTTGACGGATAAGTTGGATAAGCGTCTCCCTCATCCTTTGAATCCTATTGTTAACGAGTTAGTATCAATTGCAAGGATAGCTATAGTCTGCTTGACTGAAAGTTCACAATCTCGCCCTACTATGGAGCAGGTCACCAGAGAACTCGCAATGTCATATTTGTCTACAATAGGTTAG 3138 0.356 MESQTLLSSWTGNDSCNWLGITCDEDYKFVSNVNLTNMGLRGTLETLNFSSLSNILTLNLSNNFLNGSIPTDIGALSKLSYLDLSNNDLAGTIPYEITKLTNLHILYLDNNVFNGFIPKEIGALRNLRELSISYANITGTIPISVRNLAFLSHLNLGGNNLIGNIPEEIWNLSNLKYLAVEKNKFNGSIISQDIVNLHNLETLDLSNSDISIIGPILEELWKLKNLTYLSLSLCKVTGHIPSSIGKLANLVHLNLANNQIYGHIPKEIGKSLNLKFLYLSMNNLSGSIPVEIGKLINMKNLRLSDNSLSGFIPHEIGMMRNLVEINLSNNSLSGEIPRTIGNLSKLQNLTIFTNHLTGPLPTEINMLFNLAYFFIFDNNFIGQLPHNICIGGKLKYFAVLKNNFTGPVPMSLKNCSSIVRIRLEQNQLSGNITNYFGVYPNLYYMQLSGNKFYGHISPDWGKCRSLAILNISNNNISGGIPPELGEATNLYSLDLSSNYLTGKIPKELGNLTSLSKLLISNNRLSGNIPLEITSLKELGTLNLAGNDLSGYVTKQLGYFPRLLNMNLSHNKFKGNIPAEFGQFKVIQSLDLSGNFFDGTIPLTLAKLIYLESLNISHNNLFGFIPSNFDQMLSLLSVDISFNQFEGPIPNIPAFNKATIEVLRNNKRLCGNVTGLELCPASSSTRSHNHKINKVLLISLPLAIGTLILVLVCFKFSNHLCKTSTTREYLARGNVIDTQNLFTIWSFDGKMVYENIIEATEDFDDKHLIGVGGHGSVYKAELQTGQVVAVKKLHSVVDEENSNLKSFTSEIQALTEIRHRNIVKLHGFCLHSRASFLVYEFMGKGSVDNILKDDDQAIAFDWNKRVNVIKDLANALCYMHHHCSPPIVHRDISSKNILLNSEYVAHVSDFGIAKLLNPNSTNWSSYAGTFGYAAPEYAYTMKVNEKCDVYSFGVLALEILFGKHPGGFIYHSSLSPLWKIMGNILDDMSLTDKLDKRLPHPLNPIVNELVSIARIAIVCLTESSQSRPTMEQVTRELAMSYLSTIG 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01003 1045 SUPERFAMILY Protein kinase-like (PK-like) 736 1036 IPR011009 -
Trre13g01003 1045 FunFam MDIS1-interacting receptor like kinase 2 841 1042 - -
Trre13g01003 1045 FunFam Leucine-rich repeat receptor protein kinase MSP1 725 840 - -
Trre13g01003 1045 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Trre13g01003 1045 FunFam Leucine-rich repeat receptor-like protein kinase TDR 97 372 - -
Trre13g01003 1045 SUPERFAMILY RNI-like 32 357 - -
Trre13g01003 1045 FunFam Leucine-rich repeat receptor-like kinase 1 96 - -
Trre13g01003 1045 ProSiteProfiles Protein kinase domain profile. 762 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01003 1045 Gene3D Phosphorylase Kinase; domain 1 727 840 - -
Trre13g01003 1045 Gene3D Transferase(Phosphotransferase) domain 1 841 1042 - -
Trre13g01003 1045 Pfam Leucine Rich Repeat 321 343 IPR001611 GO:0005515
Trre13g01003 1045 Pfam Leucine Rich Repeat 610 629 IPR001611 GO:0005515
Trre13g01003 1045 Pfam Leucine Rich Repeat 489 511 IPR001611 GO:0005515
Trre13g01003 1045 Coils Coil 796 816 - -
Trre13g01003 1045 Gene3D Ribonuclease Inhibitor 1 140 IPR032675 -
Trre13g01003 1045 SUPERFAMILY L domain-like 395 670 - -
Trre13g01003 1045 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 273 1037 - -
Trre13g01003 1045 SMART LRR_typ_2 197 220 IPR003591 -
Trre13g01003 1045 SMART LRR_typ_2 100 124 IPR003591 -
Trre13g01003 1045 SMART LRR_typ_2 52 76 IPR003591 -
Trre13g01003 1045 SMART LRR_typ_2 319 343 IPR003591 -
Trre13g01003 1045 SMART LRR_typ_2 148 172 IPR003591 -
Trre13g01003 1045 SMART LRR_typ_2 511 535 IPR003591 -
Trre13g01003 1045 SMART LRR_typ_2 607 630 IPR003591 -
Trre13g01003 1045 SMART LRR_typ_2 247 271 IPR003591 -
Trre13g01003 1045 Gene3D Ribonuclease Inhibitor 191 273 IPR032675 -
Trre13g01003 1045 Gene3D Ribonuclease Inhibitor 274 351 IPR032675 -
Trre13g01003 1045 Gene3D Ribonuclease Inhibitor 353 680 IPR032675 -
Trre13g01003 1045 ProSitePatterns Protein kinases ATP-binding region signature. 768 791 IPR017441 GO:0005524
Trre13g01003 1045 ProSitePatterns Tyrosine protein kinases specific active-site signature. 886 898 IPR008266 GO:0004672|GO:0006468
Trre13g01003 1045 Pfam Protein kinase domain 763 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01003 1045 Gene3D Ribonuclease Inhibitor 141 190 IPR032675 -
Trre13g01003 1045 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 373 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01003 Trre-Chr13 8100669 8103914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01003 3 934 Receptor kinase-like Gene Family AT4G08850 40.977 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g01003 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01003 - - tpra:123888271 1160.21