Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01002 ATGCTATTCTTATTTTCAACCTTTAAGTTCATAAATTTTATTTCAATATGTTTTGGTTCATTCATAATAGCCTCTTCAAAGACTATTTCATCTTCTTCAACCATCAATGAAAGAATTATAGAAACAAGTTCATTGTTGAAGTGGAAAAGCAACCTTGAAATGGAAAGCCAAACCTTGCTATCTTCATGGACAGGCAACGATTCATGCAACTGGCTAGGAATTACATGTGATGAAGATTACAAATTTGTCTCCAATGTAAATCTCACAAATATGGGATTAAGAGGTACACTTGAAACTCTTAACTTCTCATCACTTTCAAATATCCTCACACTTAATCTTAGTAACAACTTCTTGAATGGAAGTATTCCTACCGATATCGGGGCGTTGTCCAAACTATCCTATCTTGATCTCAGTAACAATGATCTTGCAGGAACAATCCCATATGAAATAACAAAGTTGACCAATCTTCATATTTTATATTTAGATAACAATGTTTTCAATGGTTTCATTCCTAAGGAAATAGGTGCATTAAGAAATCTAAGAGAACTTAGTATTTCGTATGCGAATATCACTGGGACTATTCCTATTTCGGTCAGGAACTTGGCCTTCTTGTCACACTTGAATCTAGGAGGCAACAATCTTATAGGAAACATACCAGAAGAAATTTGGAATTTGAGCAACTTAAAGTACCTAGCAGTTGAAAAAAACAAATTCAATGGTTCTATAATTTCCCAAGATATAGTAAACTTGCATAATCTAGAGACTCTAGATCTTAGCAATAGTGATATTTCCATTATTGGTCCTATCCTAGAAGAATTGTGGAAGTTGAAAAATTTGACATACCTTTCTCTTTCACTTTGCAAAGTCACAGGACATATCCCATCATCTATAGGAAAGTTGGCTAACTTGGTGCATCTAAATTTAGCAAATAACCAAATTTATGGCCACATTCCTAAGGAAATTGGTAAGTCATTGAACCTAAAATTTCTATATCTTTCAATGAACAACTTATCTGGCTCTATTCCTGTGGAAATTGGTAAATTGATCAACATGAAAAATTTAAGGCTTAGTGACAATAGTCTTTCTGGTTTCATTCCTCATGAAATTGGAATGATGAGAAACTTGGTTGAAATTAATTTGTCCAATAACTCTTTATCAGGTGAAATCCCACGTACAATTGGAAACTTAAGCAAGTTACAAAATCTTACCATATTTACAAACCATCTCACTGGGCCACTTCCTACAGAAATCAACATGCTTTTCAATTTGGCATATTTCTTTATATTTGATAACAATTTCATTGGTCAGCTCCCACACAATATTTGCATTGGTGGAAAGTTGAAATACTTTGCTGTTTTGAAAAACAACTTCACTGGTCCTGTTCCTATGAGTTTGAAGAATTGCTCTAGCATTGTAAGAATTAGGCTTGAACAAAACCAACTTTCTGGAAATATAACAAACTACTTTGGTGTGTATCCAAATTTGTACTATATGCAGTTAAGTGGAAATAAGTTTTATGGCCATATTTCACCCGACTGGGGAAAATGTCGAAGCCTGGCGATCCTTAACATCTCCAATAATAACATATCAGGTGGTATACCGCCAGAACTAGGTGAGGCAACCAACTTATATTCACTTGACCTATCTTCGAACTACCTCACCGGAAAAATTCCGAAGGAATTAGGCAACTTGACTTCATTGTCCAAACTTTTGATCAGCAACAACCGTCTTTCAGGAAACATTCCTTTAGAAATAACATCACTAAAGGAACTTGGTACGTTAAATCTTGCGGGAAATGATCTAAGTGGCTATGTCACAAAACAACTTGGATATTTTCCTAGATTATTGAACATGAATTTGAGTCATAACAAATTTAAAGGAAATATTCCTGCTGAGTTTGGCCAATTTAAAGTCATTCAAAGTCTTGATCTCAGTGGTAATTTTTTCGATGGAACAATACCGTTAACACTTGCAAAACTGATATACTTAGAGTCATTGAATATATCACATAATAACCTTTTTGGATTTATTCCCTCGAACTTTGATCAGATGCTCAGCTTGTTATCTGTTGACATATCATTTAATCAATTCGAGGGTCCGATTCCAAACATTCCGGCTTTCAATAAAGCTACCATTGAAGTTTTGAGAAATAATAAAAGATTGTGTGGTAATGTCACTGGCTTGGAGCTTTGTCCAGCATCAAGCAGTACTAGATCTCACAATCATAAGATCAATAAAGTCTTATTGATAAGTTTACCTCTTGCAATTGGAACTCTAATACTAGTATTAGTTTGTTTCAAATTCTCTAATCATCTCTGCAAAACTTCAACCACAAGAGAATATCTAGCTCGAGGGAACGTTATTGATACTCAAAACCTATTTACCATATGGAGTTTTGACGGAAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGATTTCGATGATAAACATCTCATCGGAGTTGGAGGTCATGGAAGTGTTTACAAAGCGGAATTACAGACCGGTCAAGTAGTTGCGGTGAAAAAACTCCATTCAGTAGTAGATGAAGAAAATTCCAACCTAAAATCTTTCACAAGTGAGATCCAAGCTCTGACAGAAATTAGACACCGTAACATTGTCAAGCTGCATGGATTTTGTTTGCATTCTCGAGCTTCGTTTTTGGTCTACGAATTCATGGGAAAAGGAAGTGTAGATAACATTTTAAAAGATGATGATCAAGCAATTGCATTTGACTGGAATAAAAGAGTGAATGTCATTAAAGATTTAGCTAATGCTTTATGTTATATGCATCATCATTGCTCGCCTCCAATTGTTCATCGAGATATATCAAGCAAGAATATACTTCTAAATTCTGAATATGTGGCTCATGTTTCTGACTTCGGAATCGCTAAGCTTCTTAATCCAAACTCAACCAACTGGTCCTCATATGCAGGAACCTTTGGATATGCTGCTCCAGAATATGCATATACAATGAAAGTGAATGAGAAATGTGATGTGTATAGTTTTGGGGTGTTAGCATTGGAAATACTTTTTGGAAAACACCCTGGAGGTTTTATATATCATTCCTCACTATCACCTTTGTGGAAAATTATGGGCAACATACTTGATGATATGTCGTTGACGGATAAGTTGGATAAGCGTCTCCCTCATCCTTTGAATCCTATTGTTAACGAGTTAGTATCAATTGCAAGGATAGCTATAGTCTGCTTGACTGAAAGTTCACAATCTCGCCCTACTATGGAGCAGGTCACCAGAGAACTCGCAATGTCATATTTGTCTACAATAGGTTAG 3297 0.3521 MLFLFSTFKFINFISICFGSFIIASSKTISSSSTINERIIETSSLLKWKSNLEMESQTLLSSWTGNDSCNWLGITCDEDYKFVSNVNLTNMGLRGTLETLNFSSLSNILTLNLSNNFLNGSIPTDIGALSKLSYLDLSNNDLAGTIPYEITKLTNLHILYLDNNVFNGFIPKEIGALRNLRELSISYANITGTIPISVRNLAFLSHLNLGGNNLIGNIPEEIWNLSNLKYLAVEKNKFNGSIISQDIVNLHNLETLDLSNSDISIIGPILEELWKLKNLTYLSLSLCKVTGHIPSSIGKLANLVHLNLANNQIYGHIPKEIGKSLNLKFLYLSMNNLSGSIPVEIGKLINMKNLRLSDNSLSGFIPHEIGMMRNLVEINLSNNSLSGEIPRTIGNLSKLQNLTIFTNHLTGPLPTEINMLFNLAYFFIFDNNFIGQLPHNICIGGKLKYFAVLKNNFTGPVPMSLKNCSSIVRIRLEQNQLSGNITNYFGVYPNLYYMQLSGNKFYGHISPDWGKCRSLAILNISNNNISGGIPPELGEATNLYSLDLSSNYLTGKIPKELGNLTSLSKLLISNNRLSGNIPLEITSLKELGTLNLAGNDLSGYVTKQLGYFPRLLNMNLSHNKFKGNIPAEFGQFKVIQSLDLSGNFFDGTIPLTLAKLIYLESLNISHNNLFGFIPSNFDQMLSLLSVDISFNQFEGPIPNIPAFNKATIEVLRNNKRLCGNVTGLELCPASSSTRSHNHKINKVLLISLPLAIGTLILVLVCFKFSNHLCKTSTTREYLARGNVIDTQNLFTIWSFDGKMVYENIIEATEDFDDKHLIGVGGHGSVYKAELQTGQVVAVKKLHSVVDEENSNLKSFTSEIQALTEIRHRNIVKLHGFCLHSRASFLVYEFMGKGSVDNILKDDDQAIAFDWNKRVNVIKDLANALCYMHHHCSPPIVHRDISSKNILLNSEYVAHVSDFGIAKLLNPNSTNWSSYAGTFGYAAPEYAYTMKVNEKCDVYSFGVLALEILFGKHPGGFIYHSSLSPLWKIMGNILDDMSLTDKLDKRLPHPLNPIVNELVSIARIAIVCLTESSQSRPTMEQVTRELAMSYLSTIG 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01002 1098 Coils Coil 849 869 - -
Trre13g01002 1098 ProSiteProfiles Protein kinase domain profile. 815 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01002 1098 Gene3D Transferase(Phosphotransferase) domain 1 894 1095 - -
Trre13g01002 1098 Gene3D Ribonuclease Inhibitor 244 504 IPR032675 -
Trre13g01002 1098 FunFam Leucine-rich repeat receptor-like protein kinase TDR 150 425 - -
Trre13g01002 1098 FunFam Leucine-rich repeat receptor protein kinase MSP1 778 893 - -
Trre13g01002 1098 Pfam Leucine rich repeat 178 237 IPR001611 GO:0005515
Trre13g01002 1098 SMART LRR_typ_2 660 683 IPR003591 -
Trre13g01002 1098 SMART LRR_typ_2 300 324 IPR003591 -
Trre13g01002 1098 SMART LRR_typ_2 153 177 IPR003591 -
Trre13g01002 1098 SMART LRR_typ_2 105 129 IPR003591 -
Trre13g01002 1098 SMART LRR_typ_2 564 588 IPR003591 -
Trre13g01002 1098 SMART LRR_typ_2 201 225 IPR003591 -
Trre13g01002 1098 SMART LRR_typ_2 250 273 IPR003591 -
Trre13g01002 1098 SMART LRR_typ_2 372 396 IPR003591 -
Trre13g01002 1098 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 322 1090 - -
Trre13g01002 1098 Pfam Protein kinase domain 816 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g01002 1098 SUPERFAMILY Protein kinase-like (PK-like) 789 1089 IPR011009 -
Trre13g01002 1098 ProSitePatterns Protein kinases ATP-binding region signature. 821 844 IPR017441 GO:0005524
Trre13g01002 1098 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 426 735 - -
Trre13g01002 1098 SUPERFAMILY RNI-like 85 410 - -
Trre13g01002 1098 Pfam Leucine Rich Repeat 374 396 IPR001611 GO:0005515
Trre13g01002 1098 Pfam Leucine Rich Repeat 663 682 IPR001611 GO:0005515
Trre13g01002 1098 Pfam Leucine Rich Repeat 542 564 IPR001611 GO:0005515
Trre13g01002 1098 ProSitePatterns Tyrosine protein kinases specific active-site signature. 939 951 IPR008266 GO:0004672|GO:0006468
Trre13g01002 1098 Gene3D Ribonuclease Inhibitor 40 147 IPR032675 -
Trre13g01002 1098 FunFam MDIS1-interacting receptor like kinase 2 894 1095 - -
Trre13g01002 1098 Pfam Leucine rich repeat N-terminal domain 42 77 IPR013210 -
Trre13g01002 1098 SUPERFAMILY L domain-like 448 723 - -
Trre13g01002 1098 Gene3D Ribonuclease Inhibitor 505 606 IPR032675 -
Trre13g01002 1098 Gene3D Ribonuclease Inhibitor 607 731 IPR032675 -
Trre13g01002 1098 Gene3D Ribonuclease Inhibitor 148 243 IPR032675 -
Trre13g01002 1098 FunFam Leucine-rich repeat receptor-like kinase 41 149 - -
Trre13g01002 1098 Gene3D Phosphorylase Kinase; domain 1 780 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01002 Trre-Chr13 8100510 8103914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01002 26 987 Receptor kinase-like Gene Family AT4G08850 40.699 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g01002 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01002 - - tpra:123888271 1180.62