Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01001 ATGGCTACCAATGAATCTTTGTTAGACAAGCCTAGAAAATCCATTCCAAAAACATTTTGGTTAATTCTCTCTTTAGTTGCTATCATAAGCTCATCAGCACTTATTGTTTCTCATCTCAACAAACCAATCTCCTTCTATCACCTCTCCTCAGCTCCCAATGTGTGTCAACATGCACTTGATACCAAATCCTGCTTAGATCATGTATCAGAAGTAATTCAAGGTGCAACTTTGGTAAACACAAAAGACCAAAAATTGCATGTACTATTCTCCTTATTAACCAAGTCCACCACACATATGCAAAACGCAATGAACACGGCTAACGCTATTAAACGCCGAATTAACAGTCCTAGAGAAGAAATTGCTTTGAATGATTGTGAACAACTAATGGACTTGTCAATGGACAGAATTTGGGACTCAGTGTTGGCCATGACAGAAAGTAATATTGACTCAGAACAAGATGCACATACATGGTTAAGTAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTATATCTCTGACTCTTATGGAAAGTGACATTCAAGAAATGATATCAAGAGCTAGAACTTCTTTGGCTGTTTTTCTTTCTGTTTTTCCTCAAAAGGGTCACGACGAATTCGTTGATGAAAAATTGAACGGTGAATTTCCATCTTGGGTTACAAGCAAGAGTAGGAGGCTTTTGGAGTCTTATGTTGGAGACATAAAGGCAAATGTTATTGTGGCAACTGATGGAAGTGGAAATTTTAAGACTGTGGCTGAGGGTGTAGCATCTGCACCTGATAATGGCAACTTGAATTTCATTGATGGAACAACCACCTTCAAAAGTGCCACTGTTGCTGCTGTTGGGGATGGATTTATAGCACAAGACATTTGGTTCCAAAACACGGCAGGCCCAGAGAAGCACCAAGCAGTGGCACTGCGCGTCGGCGCAGACCAATCTGTCATCAACCGTTGCCGCATTGACGCTTTTCAAGACACTCTATATGCACACTCCAACAGACAATTTTACCGTGACTCCGTAATTACAGTGGCTCGAAAGCCTCTATCAAACCAAAAGAACATGTTCACGGCTCAAGGCCGAGAAGATCCAGGTCAGAACACAGGAACTTCAATTCAACAATGTAACCTAACACCAAGTGATGACCTTAAGCCTGTTGTTAGCTCCATCAAAACATTCCTCGGCCGCCCATGGAAGAAATTCTCCAGAACTGTTGTATTGCAATCGTTTTTGGACAGCCACATTGATCCAACAGGATGGGCTGAATGGGATGCCGCGAGCAAGGACTTTTTGGAAACGTTGTACTACGGAGAGTACATGAACAATGGACCAGGTGCTGGTACCGGCAAGAGAGTGACTTGGCCTGGTTATCATATCATTACAGATGCAACGGAGGCTAGCAAGTTTACAGTAGCACAGCTAATCCAAGGTAATGTTTGGTTAAAGAACTCGGGGGTGGCCTTTACTGAGGGATTGTAA 1488 0.4247 MATNESLLDKPRKSIPKTFWLILSLVAIISSSALIVSHLNKPISFYHLSSAPNVCQHALDTKSCLDHVSEVIQGATLVNTKDQKLHVLFSLLTKSTTHMQNAMNTANAIKRRINSPREEIALNDCEQLMDLSMDRIWDSVLAMTESNIDSEQDAHTWLSSVLTNHATCLDGLEGISLTLMESDIQEMISRARTSLAVFLSVFPQKGHDEFVDEKLNGEFPSWVTSKSRRLLESYVGDIKANVIVATDGSGNFKTVAEGVASAPDNGNLNFIDGTTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITVARKPLSNQKNMFTAQGREDPGQNTGTSIQQCNLTPSDDLKPVVSSIKTFLGRPWKKFSRTVVLQSFLDSHIDPTGWAEWDAASKDFLETLYYGEYMNNGPGAGTGKRVTWPGYHIITDATEASKFTVAQLIQGNVWLKNSGVAFTEGL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01001 495 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
Trre13g01001 495 NCBIfam pectinesterase inhibitor domain 23 184 IPR006501 GO:0004857
Trre13g01001 495 Pfam Pectinesterase 347 481 IPR000070 GO:0030599|GO:0042545
Trre13g01001 495 Pfam Pectinesterase 266 346 IPR000070 GO:0030599|GO:0042545
Trre13g01001 495 SUPERFAMILY Pectin lyase-like 239 494 IPR011050 -
Trre13g01001 495 PANTHER PECTINESTERASE 266 485 - -
Trre13g01001 495 Pfam Plant invertase/pectin methylesterase inhibitor 53 184 IPR006501 GO:0004857
Trre13g01001 495 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 186 IPR035513 -
Trre13g01001 495 Gene3D - 265 495 IPR012334 -
Trre13g01001 495 SMART PMEI_2 46 197 IPR006501 GO:0004857
Trre13g01001 495 CDD PMEI-like_4 55 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01001 Trre-Chr13 8092851 8095190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01001 3 495 Carbohydrate Esterase AT1G11580 46.359 4.42e-165 477