Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01000 ATGGCTACCAATGAATCTTTGTTAGACAAGCCTAGAAAATCCATTCCAAAAACATTTTGGTTAATTCTCTCTTTAGTTGCTATCATAAGCTCATCAGCACTTATTGTTTCTCATCTCAACAAACCAATCTCCTTCTATCACCTCTCCTCAGCTCCCAATGTGTGTCAACATGCACTTGATACCAAATCCTGCTTAGATCATGTATCAGAAGTAATTCAAGGTGCAACTTTGGTAAACACAAAAGACCAAAAATTGCATGTACTATTCTCCTTATTAACCAAGTCCACCACACATATGCAAAACGCAATGAACACGGCTAACGCTATTAAACGCCGAATTAACAGTCCTAGAGAAGAAATTGCTTTGAATGATTGTGAACAACTAATGGACTTGTCAATGGACAGAATTTGGGACTCAGTGTTGGCCATGACAGAAAGTAATATTGACTCAGAACAAGATGCACATACATGGTTAAGTAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTATATCTCTGACTCTTATGGAAAGTGACATTCAAGAAATGATATCAAGAGCTAGAACTTCTTTGGCTGTTTTTCTTTCTGTTTTTCCTCAAAAGGGTCACGACGAATTCGTTGATGAAAAATTGAACGGTGAATTTCCATCTTGGGTTACAAGCAAGAGTAGGAGGCTTTTGGAGTCTTATGTTGGAGACATAAAGGCAAATGTTATTGTGGCAACTGATGGAAGTGGAAATTTTAAGACTGTGGCTGAGGGTGTAGCATCTGCACCTGATAATGGCAACTTGAATTTCATTGATGGAACAACCACCTTCAAAAGTGCCACTGTTGCTGCTGTTGGGGATGGATTTATAGCACAAGACATTTGGTTCCAAAACACGGCAGGCCCAGAGAAGCACCAAGCAGTGGCACTGCGCGTCGGCGCAGACCAATCTGTCATCAACCGTTGCCGCATTGACGCTTTTCAAGACACTCTATATGCACACTCCAACAGACAATTTTACCGTGACTCCGTAATTACAGGTACAATTGACTTCATCTTTGGAAACGCGGCTGTTGTATTCCAAAAGTGCAATTTAGTGGCTCGAAAGCCTCTATCAAACCAAAAGAACATGTTCACGGCTCAAGGCCGAGAAGATCCAGGTCAGAACACAGGAACTTCAATTCAACAATGTAACCTAACACCAAGTGATGACCTTAAGCCTGTTGTTAGCTCCATCAAAACATTCCTCGGCCGCCCATGGAAGAAATTCTCCAGAACTGTTGTATTGCAATCGTTTTTGGACAGCCACATTGATCCAACAGGATGGGCTGAATGGGATGCCGCGAGCAAGGACTTTTTGGAAACGTTGTACTACGGAGAGTACATGAACAATGGACCAGGTGCTGGTACCGGCAAGAGAGTGACTTGGCCTGGTTATCATATCATTACAGATGCAACGGAGGCTAGCAAGTTTACAGTAGCACAGCTAATCCAAGGTAATGTTTGGTTAAAGAACTCGGGGGTGGCCTTTACTGAGGGATTGTAA 1545 0.4233 MATNESLLDKPRKSIPKTFWLILSLVAIISSSALIVSHLNKPISFYHLSSAPNVCQHALDTKSCLDHVSEVIQGATLVNTKDQKLHVLFSLLTKSTTHMQNAMNTANAIKRRINSPREEIALNDCEQLMDLSMDRIWDSVLAMTESNIDSEQDAHTWLSSVLTNHATCLDGLEGISLTLMESDIQEMISRARTSLAVFLSVFPQKGHDEFVDEKLNGEFPSWVTSKSRRLLESYVGDIKANVIVATDGSGNFKTVAEGVASAPDNGNLNFIDGTTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCNLVARKPLSNQKNMFTAQGREDPGQNTGTSIQQCNLTPSDDLKPVVSSIKTFLGRPWKKFSRTVVLQSFLDSHIDPTGWAEWDAASKDFLETLYYGEYMNNGPGAGTGKRVTWPGYHIITDATEASKFTVAQLIQGNVWLKNSGVAFTEGL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01000 514 ProSitePatterns Pectinesterase signature 2. 345 354 IPR033131 -
Trre13g01000 514 SUPERFAMILY Pectin lyase-like 239 513 IPR011050 -
Trre13g01000 514 FunFam Pectinesterase 4 264 514 - -
Trre13g01000 514 PANTHER PECTINESTERASE 266 504 - -
Trre13g01000 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
Trre13g01000 514 Gene3D - 265 514 IPR012334 -
Trre13g01000 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 185 IPR035513 -
Trre13g01000 514 NCBIfam pectinesterase inhibitor domain 23 184 IPR006501 GO:0004857
Trre13g01000 514 Pfam Plant invertase/pectin methylesterase inhibitor 53 184 IPR006501 GO:0004857
Trre13g01000 514 Pfam Pectinesterase 266 500 IPR000070 GO:0030599|GO:0042545
Trre13g01000 514 SMART PMEI_2 46 197 IPR006501 GO:0004857
Trre13g01000 514 CDD PMEI-like_4 55 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01000 Trre-Chr13 8092851 8095190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01000 3 514 Carbohydrate Esterase AT1G11580 48.845 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01000 K01051 - gmx:100815836 736.873