Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00999 ATGGCTACTCAACAGTCTTTGTTAGACAAGCCTAGAAAATCCATTCCCAAAACATTTTGGTTAATCCTCTCTTTAGCTGCTATCATAAGCTCATCAGCCCTTATTGTTTCTCATCTCAATAAACCAAACTCCTTCTTCAACCTCACCTCATCTCCCAATGTGTGTCAACATGCTATTGACACAAAATCATGCTTAACACATGTATTAGAAGTAGTTCAAGGTTCAACCTTGGCCAACACAAAAGACCACAAATTGAGTACACTCATATCCTTATTAACCAAATCCATCACACACATTCAAAAAGCCATGGACACGGCTAACATTATCAAACGCCGAATTAACAGCCCGAAAGAGGAAAGTGCTTTGAATGTCTGTGAGCAACTAATGGACTTGTCCATGGACAGAGTTTGGGACTCAGTGTTGACTCTAACAAAAGATAACACTGACTCACAGCAAGATGCAAACACATGGCTAAGTAGTGTACTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTACATCTCAGGCCGTTATGGAAAGTGATCTTCAGGACTTGATATCCAGAGCTAGATCTTCTCTTGCCGTGCTTGTTGCTGTTTTACCCCCAAAGGGTCACGATAAATACATTGACGAATCATTGAACGGGGACTTTCCCTCTTGGGTAACAAGTAAGGATCGTAGGCTTTTGGAATCTTCAGCTGGGGACATACAGGCCAATGTTGTGGTGGCTAAGGACGGCAGCGGTAATTTCAAGACTGTGGCTGAGGCTGTGGCATCTGCACCCAACAAAGGTAAGACAAGGTATGTTATCTATGTGAAAAATGGAACCTACGAAGAGAAAGTAGACATCAGTAGTCAAAAGACGAATGTGATGCTCGTGGGTGATGGTGCGGATGCAACGATAATCACAGGCAGCTTGAATGTTGTCGATGGAACAGGCACCTTCCAAAGTGCAACAGTTGCTGCTGTTGGGGATGGGTTTATAGCTCAGGACATTGCATTCCTAAACACCGCAGGCCCAGAAAAGCACCAGGCTGTTGCTCTCCGCGTCGGTTCGGATAAATCCGTCATCAACCGCTGCAAAATTGATGCGTTTCAAGACACTCTCTACACACACTCCAACCGGCAATTTTACCGTGACTCTTTCATTACCGGTACCATCGACTTTATCTTTGGAAACGGAGCTGTTGTGTTGCAGAAGTGCCAACTCGTGGCCCGAAAGCCCCTGAACAACCAAAAAAACATGGTCACAGCCCAAGGTCGACTAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAATGTGACGTAATACCAAGCCCAGATCTCGAAGCTGTGCAAGGCTCCATCAAAACTTACTTGGGCCGCCCATGGAAGAAATACTCCAGGACTGTTGTGCTGCAGTCCTTAATAGGCACCCACATCGACCCAACAGGATGGGCTGAATGGGATGCCGCGAGTAAGGACTTTCTCGAAACATTGTACTATGGAGAGTACATGAACAGTGGACCCGGTGCTGGTATCAGCAAGAGAGTGAACTGGCCTGGTTATCATATCATCACAAGTGCTGAAGAGGCAAGCAAGTTTACAGTAACAGAGCTCATCCAGGGTAATGTTTGGTTGAAGAACACAGGGGTGGACTTCATCGAAGGCCTGTAG 1665 0.4565 MATQQSLLDKPRKSIPKTFWLILSLAAIISSSALIVSHLNKPNSFFNLTSSPNVCQHAIDTKSCLTHVLEVVQGSTLANTKDHKLSTLISLLTKSITHIQKAMDTANIIKRRINSPKEESALNVCEQLMDLSMDRVWDSVLTLTKDNTDSQQDANTWLSSVLTNHATCLDGLEGTSQAVMESDLQDLISRARSSLAVLVAVLPPKGHDKYIDESLNGDFPSWVTSKDRRLLESSAGDIQANVVVAKDGSGNFKTVAEAVASAPNKGKTRYVIYVKNGTYEEKVDISSQKTNVMLVGDGADATIITGSLNVVDGTGTFQSATVAAVGDGFIAQDIAFLNTAGPEKHQAVALRVGSDKSVINRCKIDAFQDTLYTHSNRQFYRDSFITGTIDFIFGNGAVVLQKCQLVARKPLNNQKNMVTAQGRLDPNQNTATSIQQCDVIPSPDLEAVQGSIKTYLGRPWKKYSRTVVLQSLIGTHIDPTGWAEWDAASKDFLETLYYGEYMNSGPGAGISKRVNWPGYHIITSAEEASKFTVTELIQGNVWLKNTGVDFIEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00999 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Trre13g00999 554 SMART PMEI_2 46 197 IPR006501 GO:0004857
Trre13g00999 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
Trre13g00999 554 Gene3D - 235 554 IPR012334 -
Trre13g00999 554 PANTHER PECTINESTERASE 29 544 - -
Trre13g00999 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Trre13g00999 554 NCBIfam pectinesterase inhibitor domain 53 183 IPR006501 GO:0004857
Trre13g00999 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Trre13g00999 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 179 IPR035513 -
Trre13g00999 554 FunFam Pectinesterase 235 554 - -
Trre13g00999 554 CDD PMEI-like_4 55 201 - -
Trre13g00999 554 Pfam Plant invertase/pectin methylesterase inhibitor 53 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00999 Trre-Chr13 8087157 8088913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00999 3 554 Carbohydrate Esterase AT1G11580 53.286 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00999 K01051 - gmx:100815836 811.216