Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00998 ATGTTGCAAGGTGATGTTACTAAAAGTCATAAATGCAGTAGTGTACCAAGCACTGACCTCAAACCAGTGATAGGCTCCATCAAAACTTACCTAGGCCGGCCCCGGCCATGGAAGAAATACTTGAGGACTGTTGTGTTGCAATCCTTGATAGGCAACCACATCGACCCAACAGGATGGTCTGATGCAAGTAAGGACTTTCTCCAAACATTGTATTACCGAGAGTACATGAACAGTGGACCTGGTGCTGGTATCGCCAAAAGAGTGAACTGGCCTGGTTATCATATCATCAAAAATGCTGCAGAGGCAAGCAAATTTACAGTAACACAGTTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGTTTGGCCTTCATCGCCGGCTTGTTGAAATGGGCCTTGGCAAGCACGTACTGA 414 0.4565 MLQGDVTKSHKCSSVPSTDLKPVIGSIKTYLGRPRPWKKYLRTVVLQSLIGNHIDPTGWSDASKDFLQTLYYREYMNSGPGAGIAKRVNWPGYHIIKNAAEASKFTVTQFIQGNVWLKNTGLAFIAGLLKWALASTY 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00998 137 Pfam Pectinesterase 10 114 IPR000070 GO:0030599|GO:0042545
Trre13g00998 137 Gene3D - 6 130 IPR012334 -
Trre13g00998 137 PANTHER PECTINESTERASE 9 118 - -
Trre13g00998 137 SUPERFAMILY Pectin lyase-like 11 127 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00998 Trre-Chr13 8082839 8083252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00998 10 124 Carbohydrate Esterase AT1G11580 56.897 3.64e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00998 K01051 - gmx:100815836 190.66