Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00993 ATGGCTACCAATGAATCTTTGCTAGACAAGCCTAAAAAATCCATTCCCAAAACATTTTGGTTAATCCTCTCTTTAATTGCTATCATAAGCTCATCAGCTCTTATTGTTTCTCATCTCAACAAACCAATCTCCTTCATCAACCTCTCCTCAGCTCCCAATCTGTGTGAGCATGCTATTGATACAAAATCATGCTTAACTCATGTATCAGAAGCAGTTCAAGGTTCAACCTTGGCCAACACAAAAGACCACAAATTGAGCACACTCATATCTTTATTAACCAAGTCCACCACACACATTAAAAAAGCCATGGACACGGCCAATGTTATCAAACGCCGAATTAATAACCGTAGAGAGGAAATGGCTTTGAACGACTGTGAGCAACTGATGGACTTGTCCATGGACAGAATTTGGGACTCGGTGTTGACTCTAACAAAAGATAACACTGACTCACAGCAAGATGCACACATGTGGCTAAGTAGTGTGCTCACTAATCATGCAACTTGTTTGGATGGTTTAGAAGGTACATCTCGGGTTGTTATGGAAAGTGACCTTCAGGAGTTGATATCCAGGGCTAGATCTTCTCTTGCTGTGCTTGTTGCCGCTTTACCTCGAAAGGATCATACCGGATTCATTGATGAATCACTCAATGGGGACTTTCCCTCGTGGGTAACAAGAAAGGATCGAAGGCTTTTGGAATCTTCAGTTGGCGACATAAAGGCCAATGTTGTGGTGGCTAAGGATGGGAGCGGCAAGTTCAAGACTGTGGCTGAGGCTGTGGCATCTGCACCAGACAACGGTAAGGCAAGGTACGTTATCTATGTGAAAAAGGGAATCTACAAAGAGAATGTAGAAATCGGTAAGAAAAAGACGAATGTGATGCTTGTTGGTGATGGTATGGATGCAACAATAATCACAGGCAGCTTAAATGCCATCGATGGAACAACCACCTTCAAAAGTGCAACTGTTGCTGCTGTTGGAGATGGGTTCATAGCTCAGGACATTAGGTTCCAAAACACGGCAGGCCCAGAGAAGCACCAGGCAGTTGCTCTTCGTGTCGGCGCTGATCAATCCGTCATCAACCGCTGCAAAATCGATGCATTTCAAGACACTCTCTATGCACACTCCAACCGGCAATTTTACCGTGACTCCTACATTACTGGTACCGTTGACTTCATCTTTGGAAATGCAGCAGTTGTTTTCCAGAAGAGCAATCTCGTGGCCCGAAAGCCCATGAGCAACCAAAAAAACATGGTCACAGCCCAAGGTCGAGAAGACCCAAACCAGAACACTGCAACTTCAATTCAGCAATGTAACATAATACCAAGCTCAGACCTCAAGCCTGTGCAAGGCACCATCAAAACATACCTCGGTCGCCCATGGAAGAAATACTCCAGGACAGTTGTGCTGCAATCTGTCGTGGACGGCCACATTGACCCGGCAGGATGGGCTGAATGGGATGCCGCAAGCAAGGACTTTCTCCAAACATTGTATTACGGAGAGTACTTGAACAGTGGAGCAGGTGCTGGTACCAGCAAGAGAGTGACTTGGCCTGGTTATCATATCATCAAAAGTGCTGCAGAGGCTAGCAAGTTTACAGTGGCACAACTCATCCAAGGTAATGTTTGGTTGAAGAATACAGGAGTGGCTTTCATCGAAGGTCTGTAG 1665 0.4529 MATNESLLDKPKKSIPKTFWLILSLIAIISSSALIVSHLNKPISFINLSSAPNLCEHAIDTKSCLTHVSEAVQGSTLANTKDHKLSTLISLLTKSTTHIKKAMDTANVIKRRINNRREEMALNDCEQLMDLSMDRIWDSVLTLTKDNTDSQQDAHMWLSSVLTNHATCLDGLEGTSRVVMESDLQELISRARSSLAVLVAALPRKDHTGFIDESLNGDFPSWVTRKDRRLLESSVGDIKANVVVAKDGSGKFKTVAEAVASAPDNGKARYVIYVKKGIYKENVEIGKKKTNVMLVGDGMDATIITGSLNAIDGTTTFKSATVAAVGDGFIAQDIRFQNTAGPEKHQAVALRVGADQSVINRCKIDAFQDTLYAHSNRQFYRDSYITGTVDFIFGNAAVVFQKSNLVARKPMSNQKNMVTAQGREDPNQNTATSIQQCNIIPSSDLKPVQGTIKTYLGRPWKKYSRTVVLQSVVDGHIDPAGWAEWDAASKDFLQTLYYGEYLNSGAGAGTSKRVTWPGYHIIKSAAEASKFTVAQLIQGNVWLKNTGVAFIEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00993 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Trre13g00993 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Trre13g00993 554 Gene3D - 235 554 IPR012334 -
Trre13g00993 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 178 IPR035513 -
Trre13g00993 554 NCBIfam pectinesterase inhibitor domain 23 182 IPR006501 GO:0004857
Trre13g00993 554 SMART PMEI_2 46 197 IPR006501 GO:0004857
Trre13g00993 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Trre13g00993 554 PANTHER PECTINESTERASE 32 544 - -
Trre13g00993 554 FunFam Pectinesterase 235 554 - -
Trre13g00993 554 CDD PMEI-like_4 57 200 - -
Trre13g00993 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Trre13g00993 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Trre13g00993 554 Pfam Plant invertase/pectin methylesterase inhibitor 53 188 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00993 Trre-Chr13 8051270 8053015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00993 3 554 Carbohydrate Esterase AT1G11580 56.306 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00993 K01051 - gmx:100815836 834.328