Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00992 ATGGAAACAGCCAAGATTATCAAAAGCCGAGTTAACGACCGTAGAGAGGAAATGGCTTTGAACGACTGTGAACAACTTATGGACTTGTCCATGGTTAGAGTTTGGGATTCAGTGTTGACTCTAACAAAAGATAACACTGACTCACAGAAAAATGCACACACATGGCTCAGTAGTGTACTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTACATCTCGGGCCATTATGGAAAGTGACCTTCAGGACTTGATATCCAGAGCTAGATCTTCTCTCGCTGTGCTTGTTTCTGTTTTACCTCCAAAGGATCACGACGAGTTCATTGATGAATCATTGAACGGGGACTTTCCCTCTTGGGTAACAAGTAAGGATCGAAGGCTTTTGGAATCTTCAGCTAGCAACATACAGGCCAATGTTGTGGTGGCTAAGGACGGGACTGGCAAGTTCAAGACTGTGGTTGAAGCTGTCGCATCTGCACCAGACAACGGTAAGACAAGGTATGTTATCTATGTGAAAAGGGGAATCTACAAAGAGAAAGTAGATATCAGTAGTAAAAAGACGAATGTGATGCTTGTGGGTGATGGTATGGATGCAACGATAATCACAGGCAGCTTAAATGTCATTGATGGAACAGGCACCTTCCAAAGTGCAACAGTTGCTGCTGTTGGAGATGGGTTTATAGCCCAGGACATTGGGTTCCAAAACACTGCAGGCCCAGAGAAGCATCAGGCAGTTGCTCTCCGCGTTGGATCTGATCAATCTGTCATCAACCGCTGCAAAATTGACGCATTTCAAGACACTCTCTACACACACTCCAACCGGCAATTTTACCGTGACTCCTTCATTACCGGTACTGTTGACTTTATCTTTGGAGACGCAGCTGTTGTGTTCCAGAAGAGCAAACTCGTGGCCCGAAAGCCTTTGAGCAACCAAAACAACATGGTCACAGCCCAAGGTCGACTAGATCCAAACCAGAACACCGCAACTTCAATTCAACAATGTGACATAATACCGAGCTCGGACCTCAAACCTGTGGTAGGCTCTATCAAAACATACTTAGGTCGCCCATGGAAGAAATACTCAAGGACCGTTGTGCTGCAGTCCGTCGTGGACAGCCACATTGACCCAACAGGATGGGCTGAATGGGATGCCGCTAGCAAGGACTTTCTGCAAACATTATATTACGGAGAGTACATGAACAGCGGAGCAGGTGCTGGTACCGGCAAGAGAGTGACTTGGCCTGGTTATCATATCATCAAAACTGCTGCAGAGGCTAGCAAGTTTACAGTAGCACAACTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTAGCCTTTATCGAAGGCTTGTAG 1359 0.4606 METAKIIKSRVNDRREEMALNDCEQLMDLSMVRVWDSVLTLTKDNTDSQKNAHTWLSSVLTNHATCLDGLEGTSRAIMESDLQDLISRARSSLAVLVSVLPPKDHDEFIDESLNGDFPSWVTSKDRRLLESSASNIQANVVVAKDGTGKFKTVVEAVASAPDNGKTRYVIYVKRGIYKEKVDISSKKTNVMLVGDGMDATIITGSLNVIDGTGTFQSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVGSDQSVINRCKIDAFQDTLYTHSNRQFYRDSFITGTVDFIFGDAAVVFQKSKLVARKPLSNQNNMVTAQGRLDPNQNTATSIQQCDIIPSSDLKPVVGSIKTYLGRPWKKYSRTVVLQSVVDSHIDPTGWAEWDAASKDFLQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKTAAEASKFTVAQLIQGNVWLKNTGVAFIEGL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00992 452 SUPERFAMILY Pectin lyase-like 135 451 IPR011050 -
Trre13g00992 452 ProSitePatterns Pectinesterase signature 2. 283 292 IPR033131 -
Trre13g00992 452 PANTHER PECTINESTERASE 10 442 - -
Trre13g00992 452 CDD PMEI-like_4 1 99 - -
Trre13g00992 452 ProSitePatterns Pectinesterase signature 1. 164 183 IPR018040 -
Trre13g00992 452 Pfam Pectinesterase 139 438 IPR000070 GO:0030599|GO:0042545
Trre13g00992 452 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 7 77 IPR035513 -
Trre13g00992 452 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 100 IPR035513 -
Trre13g00992 452 Pfam Plant invertase/pectin methylesterase inhibitor 12 90 IPR006501 GO:0004857
Trre13g00992 452 Gene3D - 132 452 IPR012334 -
Trre13g00992 452 FunFam Pectinesterase 133 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00992 Trre-Chr13 8048039 8049482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00992 10 452 Carbohydrate Esterase AT1G11580 62.971 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00992 K01051 - gmx:100815836 737.643