Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00991 ATGGTTTCCCAACAGTCTTTGCTAGACAAGCCTAGAAAATCCATTCCAAAAACATTTTGGTTAATCATCTCTTTAATTTCTATCATAAGCTCATCAGCCCTTATTTTTTCTCATCTCAACAAACCAATCTCCTTCTTTCACCTCTCCTCAGCTCCCAATGTGTGTGCGCATGCTATTGATACAAAATCATGTTTAACTCATGTATCAGAAGCAGTTCAAGGTTCAACCTTGTCCAACACAAAAGACCACAAATTGAGCACACTTATATCCTTGTTAACCAAGTCCACCACACACATTCAGAAAGCCATGGAAACAGCCAAGATTATCAAAAGCCGAGTTAACGACCGTAGAGAGGAAATGGCTTTGAACGACTGTGAACAACTTATGGACTTGTCCATGGTTAGAGTTTGGGATTCAGTGTTGACTCTAACAAAAGATAACACTGACTCACAGAAAAATGCACACACATGGCTCAGTAGTGTACTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTACATCTCGGGCCATTATGGAAAGTGACCTTCAGGACTTGATATCCAGAGCTAGATCTTCTCTCGCTGTGCTTGTTTCTGTTTTACCTCCAAAGGATCACGACGAGTTCATTGATGAATCATTGAACGGGGACTTTCCCTCTTGGGTAACAAGTAAGGATCGAAGGCTTTTGGAATCTTCAGCTAGCAACATACAGGCCAATGTTGTGGTGGCTAAGGACGGGACTGGCAAGTTCAAGACTGTGGTTGAAGCTGTCGCATCTGCACCAGACAACGGTAAGACAAGGTATGTTATCTATGTGAAAAGGGGAATCTACAAAGAGAAAGTAGATATCAGTAGTAAAAAGACGAATGTGATGCTTGTGGGTGATGGTATGGATGCAACGATAATCACAGGCAGCTTAAATGTCATTGATGGAACAGGCACCTTCCAAAGTGCAACAGTTGCTGCTGTTGGAGATGGGTTTATAGCCCAGGACATTGGGTTCCAAAACACTGCAGGCCCAGAGAAGCATCAGGCAGTTGCTCTCCGCGTTGGATCTGATCAATCTGTCATCAACCGCTGCAAAATTGACGCATTTCAAGACACTCTCTACACACACTCCAACCGGCAATTTTACCGTGACTCCTTCATTACCGGTACTGTTGACTTTATCTTTGGAGACGCAGCTGTTGTGTTCCAGAAGAGCAAACTCGTGGCCCGAAAGCCTTTGAGCAACCAAAACAACATGGTCACAGCCCAAGGTCGACTAGATCCAAACCAGAACACCGCAACTTCAATTCAACAATGTGACATAATACCGAGCTCGGACCTCAAACCTGTGGTAGGCTCTATCAAAACATACTTAGGTCGCCCATGGAAGAAATACTCAAGGACCGTTGTGCTGCAGTCCGTCGTGGACAGCCACATTGACCCAACAGGATGGGCTGAATGGGATGCCGCTAGCAAGGACTTTCTGCAAACATTATATTACGGAGAGTACATGAACAGCGGAGCAGGTGCTGGTACCGGCAAGAGAGTGACTTGGCCTGGTTATCATATCATCAAAACTGCTGCAGAGGCTAGCAAGTTTACAGTAGCACAACTCATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTAGCCTTTATCGAAGGCTTGTAG 1665 0.4468 MVSQQSLLDKPRKSIPKTFWLIISLISIISSSALIFSHLNKPISFFHLSSAPNVCAHAIDTKSCLTHVSEAVQGSTLSNTKDHKLSTLISLLTKSTTHIQKAMETAKIIKSRVNDRREEMALNDCEQLMDLSMVRVWDSVLTLTKDNTDSQKNAHTWLSSVLTNHATCLDGLEGTSRAIMESDLQDLISRARSSLAVLVSVLPPKDHDEFIDESLNGDFPSWVTSKDRRLLESSASNIQANVVVAKDGTGKFKTVVEAVASAPDNGKTRYVIYVKRGIYKEKVDISSKKTNVMLVGDGMDATIITGSLNVIDGTGTFQSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVGSDQSVINRCKIDAFQDTLYTHSNRQFYRDSFITGTVDFIFGDAAVVFQKSKLVARKPLSNQNNMVTAQGRLDPNQNTATSIQQCDIIPSSDLKPVVGSIKTYLGRPWKKYSRTVVLQSVVDSHIDPTGWAEWDAASKDFLQTLYYGEYMNSGAGAGTGKRVTWPGYHIIKTAAEASKFTVAQLIQGNVWLKNTGVAFIEGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00991 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Trre13g00991 554 SMART PMEI_2 46 197 IPR006501 GO:0004857
Trre13g00991 554 FunFam Pectinesterase 235 554 - -
Trre13g00991 554 NCBIfam pectinesterase inhibitor domain 32 183 IPR006501 GO:0004857
Trre13g00991 554 SUPERFAMILY Pectin lyase-like 237 553 IPR011050 -
Trre13g00991 554 CDD PMEI-like_4 55 201 - -
Trre13g00991 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Trre13g00991 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 178 IPR035513 -
Trre13g00991 554 PANTHER PECTINESTERASE 35 544 - -
Trre13g00991 554 Gene3D - 234 554 IPR012334 -
Trre13g00991 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Trre13g00991 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 202 IPR035513 -
Trre13g00991 554 Pfam Plant invertase/pectin methylesterase inhibitor 53 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00991 Trre-Chr13 8047733 8049482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00991 3 554 Carbohydrate Esterase AT1G11580 55.950 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00991 K01051 - gmx:100815836 828.935