LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g00977	ATGTCGGCAGCGTCGCCGTCTCCGGCTTCCTCCAACGCCGTACCACCGCCACCTTCTAATAGCACTCGACCGCCTTCCTCATCCACTGCTCCGTCGCCTAACACTTCACCTTCACCTCCACCACCGCAACAACCACCTTCCTCCCCTTCACCTCCTCCGGCCGCTCCTCCTCCAGCTGTGCCGTCAAGCTCTCCTCCGCCATCACCACCAACAATAGCACCGTCGCCACCACCATCTTCTCCAGCTCGTCCCTCACCACCACCACCACAATCAAGAAGCCCTCCCCCGTCTTCACCGCCAATAGCACCATCAAATCCACCCCAATCATCTCCACCGGGAAATTCACCCCCTTCTCCCACCGTGTCACCTCCCAAACCTTCACCTCCACCATCCCCCAATAACTCATCTCAAACTCCACCACCAGCATCATCACCGCCGTCACCATTACAACCACCGTCACCATCACCATCATCAATCAGTCCTCCTGCCAGACCTGGTTCGCCACCACCTCGGCATTCAAATTCAACACCAACGGTATCACCACCACCATCTCCTCCATCACCCTCAACTATTCAACTGTCGCCTCCGCCGCAGAATGGACCAGAAAGATCAAGCCCTGAAACCGGAAGCAGTGGTGGAATTGGTTCTGGTGCTGTAGTGGCTATAGCTGTATTTGGTGGAATTCTATTGCTTGGTTTCATTGGAGTTGCTATCTGGTGTTTGAGGAGGCAAAAGAAAAGGGATTCTCCTAATGATGGTTATGTCATGCCTCTCACTCTTCCTTCCTCAACTGAATCAGATTCGTCCTTTTTAAAGATACACGCTGCCTCTGATCCTCTTGTAAGAAGTGGATCTAGCAGTGATGTTGTGCATACACCATCTGACCCTGGTGGTGGAATGGGCCACTCAAGGAACTGGTTTTCATATGAAGAACTAATCAAGGCCACAAATGGTTTCTCAACTCTGAATCTTTTGGGAGAAGGCGGATTTGGTTCTGTGTATAAAGGATGTTTACCTGATGGCAGAGAGATAGCAGTGAAGCAGCTCAAAATTGGTGGCAGTCAAGGGGAGAGAGAATTCAAAGCTGAAGTTGACATAATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTTGGATACTGCATTCAAGATGACAGAAAAATACTTGTCTATGACTATGTCCCTAACAACACACTTCATTTTCATCTACATGAGGAAGGTCAACCTGTGCTGGAATGGGAAAAACGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGAATTATTCACAGAGATATCAAGCCATCAAACATTCTTTTGGATCACAACTATGAAGCTCAAGTATCAGATTTTGGCCTAGCGAAATTAGCTCTAGATGCAAATACACATGTAACGACGCGCGTCATGGGAACTTTTGGGTATGTTGCGCCTGAATATGCGTCAAGTGGAAAATTGACCGACAAGTCTGATGTATATTCTTTTGGAGTTGTGCTTTTGGAGCTCATTACCGGACGGATGCCAGTAGATCCATCACAAATGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTAAGTGATGCACTTGAAACTGGGGAATTTGAGAGTTTCGTAGATCCAAAGCTAGGAAAGAACTACATTGATAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTTCGGCATTCAGCTTCTAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTCGAAAGCTTAGCAACTTCAGATCTAACGAACGGAATGCGAGTTGGTGAAAGCCGGGCATTTGACTCTGCAGAACAATCTGAAGAAATAAGATTGTTTCGGAGGATGGCATTCGGTAGTCAAAATTATAGCACAGACTATTTCAATCACTCTAGTTTGCGTTTGTAA	1938	0.4737	MSAASPSPASSNAVPPPPSNSTRPPSSSTAPSPNTSPSPPPPQQPPSSPSPPPAAPPPAVPSSSPPPSPPTIAPSPPPSSPARPSPPPPQSRSPPPSSPPIAPSNPPQSSPPGNSPPSPTVSPPKPSPPPSPNNSSQTPPPASSPPSPLQPPSPSPSSISPPARPGSPPPRHSNSTPTVSPPPSPPSPSTIQLSPPPQNGPERSSPETGSSGGIGSGAVVAIAVFGGILLLGFIGVAIWCLRRQKKRDSPNDGYVMPLTLPSSTESDSSFLKIHAASDPLVRSGSSSDVVHTPSDPGGGMGHSRNWFSYEELIKATNGFSTLNLLGEGGFGSVYKGCLPDGREIAVKQLKIGGSQGEREFKAEVDIISRIHHRHLVSLVGYCIQDDRKILVYDYVPNNTLHFHLHEEGQPVLEWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDHNYEAQVSDFGLAKLALDANTHVTTRVMGTFGYVAPEYASSGKLTDKSDVYSFGVVLLELITGRMPVDPSQMGDESLVEWARPLLSDALETGEFESFVDPKLGKNYIDSEMFCMIEVAAACVRHSASKRPRMGQVVRAFESLATSDLTNGMRVGESRAFDSAEQSEEIRLFRRMAFGSQNYSTDYFNHSSLRL	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g00977	645	Gene3D	Transferase(Phosphotransferase) domain 1	395	611	-	-
	Trre13g00977	645	PRINTS	Proline rich extensin signature	63	79	-	-
	Trre13g00977	645	PRINTS	Proline rich extensin signature	8	24	-	-
	Trre13g00977	645	PRINTS	Proline rich extensin signature	28	40	-	-
	Trre13g00977	645	PRINTS	Proline rich extensin signature	40	61	-	-
	Trre13g00977	645	Pfam	Protein kinase domain	320	587	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00977	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	439	451	IPR008271	GO:0004672\|GO:0006468
	Trre13g00977	645	SMART	serkin_6	319	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00977	645	CDD	STKc_IRAK	325	594	-	-
	Trre13g00977	645	ProSiteProfiles	Protein kinase domain profile.	319	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g00977	645	SUPERFAMILY	Protein kinase-like (PK-like)	302	590	IPR011009	-
	Trre13g00977	645	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	230	626	IPR047117	-
	Trre13g00977	645	MobiDBLite	consensus disorder prediction	1	212	-	-
	Trre13g00977	645	Gene3D	Phosphorylase Kinase; domain 1	298	394	-	-
	Trre13g00977	645	ProSitePatterns	Protein kinases ATP-binding region signature.	325	347	IPR017441	GO:0005524
	Trre13g00977	645	MobiDBLite	consensus disorder prediction	10	202	-	-
	Trre13g00977	645	FunFam	proline-rich receptor-like protein kinase PERK8	395	605	-	-
	Trre13g00977	645	FunFam	Proline-rich receptor-like protein kinase PERK8	291	394	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g00977	Trre-Chr13	7978730	7982394	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g00977	214	641	Trihelix Transcription Factor Family	AT5G38560	63.825	0.0	588

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Trre13g00977		Pkinase	1e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g00977	-		-	tpra:123889774	856.284