Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00972 ATGGAGTTTGATCCAAATTCCATAGAAATTTCACAACCTCATGCGGGTCCCTCATTATCAATGTCATTAATCGATGCACATGCATCTATGGAAATGATTCCTAAGCTGCTAGATTCTGATCAGAGGCTCGCTCTTGGTGATAAGAATCGACAAACGAGTGACCAGGAAAAGAATGATGAAATTTTGACTCAAACTGCTAATAAAATCAAAGAAAAATGGACTGCAGATGAGGACAGACTACTTATCCTACTTGTGGATTTGATGGGGCCTAAAGATTGGTATTATATTGCCATGTTCATAGAAGGCAAGATTGGGAAACAATGCTGGGAGAGATGGCATAATCATCTTAAACCAAATATTAAGAAGGGTCCCTGGAATGAAGAGGAGGACAAAATTCTAATTGAAGCTCATAAAGAAGTTGGGAACAAGTGGACAGAAATTGCAAAGAGATTGCCAGGGCGTCCCGAGAACTCGATCAAGAACCGTTGGAATGCAACTAAGAGGAGTCTGAATCCTAAGAAGATGCACAAAAGGAGCAATGCTGGATCAAAGGGAAAATTACTTCAAAACTATATTAGGGAAGTCATTAGTCAAGAAGGTGAAAGGGAAAATAAGAGCAAGATGTATACTGAAAATGAGGAAGATCGGGCTACTCAAGAGGATGAAGTTGGTGGTGACAATGAAATGACAAGTGGATCTAGCACAATGGATTATGTTGTTTGA 723 0.3956 MEFDPNSIEISQPHAGPSLSMSLIDAHASMEMIPKLLDSDQRLALGDKNRQTSDQEKNDEILTQTANKIKEKWTADEDRLLILLVDLMGPKDWYYIAMFIEGKIGKQCWERWHNHLKPNIKKGPWNEEEDKILIEAHKEVGNKWTEIAKRLPGRPENSIKNRWNATKRSLNPKKMHKRSNAGSKGKLLQNYIREVISQEGERENKSKMYTENEEDRATQEDEVGGDNEMTSGSSTMDYVV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00972 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 174 IPR017930 -
Trre13g00972 240 FunFam Transcriptional activator Myb isoform A 69 121 - -
Trre13g00972 240 SUPERFAMILY Homeodomain-like 67 163 IPR009057 -
Trre13g00972 240 ProSiteProfiles Myb-like domain profile. 65 116 IPR001005 -
Trre13g00972 240 SMART sant 121 169 IPR001005 -
Trre13g00972 240 SMART sant 69 118 IPR001005 -
Trre13g00972 240 PANTHER MYB PROTEIN-RELATED 70 202 - -
Trre13g00972 240 MobiDBLite consensus disorder prediction 196 214 - -
Trre13g00972 240 ProSiteProfiles Myb-like domain profile. 117 167 IPR001005 -
Trre13g00972 240 Pfam Myb-like DNA-binding domain 70 116 IPR001005 -
Trre13g00972 240 Pfam Myb-like DNA-binding domain 122 164 IPR001005 -
Trre13g00972 240 MobiDBLite consensus disorder prediction 224 240 - -
Trre13g00972 240 CDD SANT 124 167 IPR001005 -
Trre13g00972 240 Gene3D - 69 122 - -
Trre13g00972 240 CDD SANT 72 116 IPR001005 -
Trre13g00972 240 MobiDBLite consensus disorder prediction 196 240 - -
Trre13g00972 240 Gene3D - 124 184 - -
Trre13g00972 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00972 Trre-Chr13 7927124 7929639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00972 53 195 MYB Transcription Factor Family AT5G40360 54.362 7.77e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g00972 Myb_DNA-binding 8.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00972 K09422 - mnt:21403422 187.578