LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g00971	ATGGCTAATGAATCTCCTCATATGAAGCCAACCCATTTTTTCAAGATCATATGTGATCAAAATCTTCATGAAGGAAAGCTTATAATGCCAAGAAATAGTTGTGTTAAAGTTGAGAAATTGCAAAAGGTAGCAGCTTTGAATCATATTGACAAAAAGTGTAAAGGAGAGCAATTGGTTATTGCTAAGAAAGTTACTGCCCTTGATAGAGCAATTTCATTCAAAACTTGTAATCCATCCTTTCATGTTGTCATGTGTCCATCATACATGGATGGTCCTAGCAATCTGCATATACCAAGTGAGTTTGGCAAAAGACACTTATTAGATTTAGACAATAAGCAGGGAGATATTCATCTTAGGTTATTAAATGGGAAAGTTTGGCAAGCAAAGTACCGAATTAGGATAGCCAATGGAGTACAAAGATATGAAATGTACTCAAGTGGATGGAAGGAATTTGCAAAGGACAATAACTTGAAAGTTGGTGATGCTTGCACCTTTGAGCTCTTACCTACTAGCACTATAGTTACCTTCATTGTTCACATCTTTAAGGATTAA	552	0.3551	MANESPHMKPTHFFKIICDQNLHEGKLIMPRNSCVKVEKLQKVAALNHIDKKCKGEQLVIAKKVTALDRAISFKTCNPSFHVVMCPSYMDGPSNLHIPSEFGKRHLLDLDNKQGDIHLRLLNGKVWQAKYRIRIANGVQRYEMYSSGWKEFAKDNNLKVGDACTFELLPTSTIVTFIVHIFKD	183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g00971	183	CDD	B3_DNA	78	182	IPR003340	GO:0003677
	Trre13g00971	183	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	61	182	IPR044837	-
	Trre13g00971	183	Pfam	B3 DNA binding domain	80	182	IPR003340	GO:0003677
	Trre13g00971	183	Gene3D	-	58	183	IPR015300	-
	Trre13g00971	183	SMART	B3_2	80	180	IPR003340	GO:0003677
	Trre13g00971	183	SUPERFAMILY	DNA-binding pseudobarrel domain	73	182	IPR015300	-
	Trre13g00971	183	ProSiteProfiles	B3 DNA-binding domain profile.	80	183	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g00971	Trre-Chr13	7921527	7923278	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g00971	58	174	REM Transcription Factor Family	AT1G49480	31.624	2.33e-12	61.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Trre13g00971		B3	9.4e-18	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g00971	-		-	mtr:11434552	171.785