Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00969 ATGGCTGGTATTGGCAGCAGAACTCGAAGCAAAAATGTTCCTTTGTTTGGATGTCTTTCTCTCGAAAAGAAGAGAAAACGGGTCACTGATTCGTTTGTTTATTTGGGCTCTATTTCTTCTTGCAAAAATATTTGCTCAGGTGATGTTAAAAGTGAAAACTTTAGTAATGTAAATGGAAGTGAGGAAAACTCTGAAGAAGATTCTGATGATTATAGCAGTGAAGAAAATGAGACTAGTGAGGAAAACTCTGAAGAAGATTCTGATGAGAGCAGTGAAGAAAATGATACAAGTGATGAAGATTTTGAAGTTGATGAGGTGAATGAAATTTCTGACAGTGATGGCGATGACAATACTTCATCATCTAAATCTCCTTGTCCTTATGTTGTTTATTACAACAAAAAATGTGGAGGAATTTCTACCAAACCATTGAAGGAGGAAGAGATTGAGAAGAGTTCAATGAAGGGTTCTTCTTCAAAGGTTAATGAAGTTTCTCAGAAACAGGATAAGAAGAGTGTTGATTCTTCTTCAAGGGATTTTGTAGATGAAAATCAAAAGGATTTTGATTCTTCTTTTAGAAGACAACAACATAGTGTACCAATGGTAGAAGACAATGGTAAAGCTAATGCTAATGATGACACTGCGGTGTCATTACAAAAACATAAGCACAAAACAGTGGAGAACAAGGGAAAGGGTCGGAGAGGTGGAAATAGCATCTGTAAGGGTAAGAAGAAGGAAACCATGGGTGACAAAAGTGGTCAAAGCAAGGTATTTTTAAACAAGGAGCTGCAAAAACTTCTTGAGGAATGGGACTACTATTTGGGAACCAAAAACACTAAGAAAAATGTTGATTCGGTTGTGTTGGAGGTGAACGATGATGATGGTGTTAACCGGAAAGATACGCGTCCACAAGTTTGTAAGGAGACACCTCCATTATATTGGAGTCTTGGTAAAAAAGTTGAAGAAGCCGCGCCAAAATCGGAGGAAGAAGAAATGATATGTGAGTTATGGGATGAAATGGATAGAGTGAGTAGAGAAGATGAAGCTGAATCAATGATTGGAAATATAGGGACCATTGAAGCTTCTATCAAAAACTTGGAAGATCCATTTTCCGTCTGTAAACATGACACTCGTCTCGACGAGGAGATTGGAGTATATTGCAGGTTGTGTGGTTTGGTTGTTACTGAGATCAGATATATCTCAGAGCCCGTGGTGGATAGATATCCGAACGAAGGTTCAGAAAGAAGGGAGTCAATTGGTGGAGACGATGGTTCACTCTTTGATCGGTCTCACTTCAATGTTTCTGATGATGATGACTCAAATACGAATTTTTATCATAATGAAGGCACAGTTTGGGACAAAATTCCTGATGTGAAGCAAACCTTATATCCTCACCAACAAGAAGGTTTTGAGTTCATATGGAAAAGCTTGGCAGGAAGCATCGAGCTTCAAAAGTTAAAGAATGCTGATCCTCGCAGCGAAGGTGGTTGCATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACAATAGTGTTTCTGAAGGCATATTTGCAAGTGTTTCCAAAATGCATGCCGATTATTGTCGCTCCTTCTAGTATACTACTAACTTGGGAAGAGGAATTCAAAAAGTGGGACATTGGAGTTCCATTTCACAATTTAAGCAATCGGGAGTTATCTGGTAAAGAGCATGCTGATGCGGTTAACACATTCGATATGTCTAATAAACATCATAGTATTGAAGAAACTCGAATGGCAAAACTGATTTTGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACCATTTGTATCAAAGGAAATGCAAAGATATGAAAAAGAAAAAGCATGAAAGTGTGAAGGAGAGAAAAGGAAAATTTGATATGCGAAAAATTCTACTTAAAGCTCCTGGTTTGTTAGTTCTAGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGTCAGAGATTCAAACGCAGAAGCGAATCATCCTTTCTGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGCACTTTGAGCTTAGTCAAGCCTTCTTTTCCTGACACGATACCGCCTGAGCTAAAAAGATTTTGCCATGAGCGGGGGCGTAAATCATCTAAAGAATGGAGTTGGGAACCTGTTTCTTGCAACACAAGAAACACTTCTGATGATAAGATCAATAGGTTGAAATTGCTAATGGATCCCTTTGTTCATGTTCACAAAGGTGTGATCCTTGAAAATAAGCTTCCCGGGTTAAGGGACTGTTTGGTGACTTTGAAGCCCAGTAGTTTGCAGAATGAAATCCTGAAGAGAATTAAACGTTCTCAGAACAAAGTATTTAACTTTGAGTATAAGATTTCATTGGCATCGGTCCATCCATCTCTTTTACTTGAATGTGATCTTTCGGAAGAAGAAGAATCTGAACTCGACAAGGATCAGCTGGAAAAGATAAGACTTAACCCGTATGAAGGTGTCAAAACAAAATTTTTGTGCGAGTTTGTTCGGCTGTGTGATTCTCTTAACGAGAAAGTTCTTGTGTTCAGCCAATACCACGCTCCTTTACGATTAATTAAAGACCAATTAAACTCGGTTTTTAACTGGTCTGACAGAGAAGTGATGTTCATGTCTAGCGATGATCCTCCAAAGGTTAAGCAGTCCATAATCCATAGCTTCAATGATGAAAATAGTAAAGCAAAGATTCTACTTGCAGCTACAAGAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGTTTCTTGATGTTGTATGGAATCCTTCAGTCAAAAGACAGGCTATAAGCCGAGCCTATGGCTTTGCTGAAAAGGACCGGTTATCTGAGCTCCTTTTTTCAGCTAAAAATGTTACTGATAATGATGATGTGCCCAAGAAACGTGCTGTGAACTTTGAAGATAGTGTTCTTGATAAGATGACTCGGCATGAAAAGCTCATAGACATGTTTGTTAAGTGCGTGGTACTGAGCAAGGAGCGAGATTTGGTCTGA 3033 0.3894 MAGIGSRTRSKNVPLFGCLSLEKKRKRVTDSFVYLGSISSCKNICSGDVKSENFSNVNGSEENSEEDSDDYSSEENETSEENSEEDSDESSEENDTSDEDFEVDEVNEISDSDGDDNTSSSKSPCPYVVYYNKKCGGISTKPLKEEEIEKSSMKGSSSKVNEVSQKQDKKSVDSSSRDFVDENQKDFDSSFRRQQHSVPMVEDNGKANANDDTAVSLQKHKHKTVENKGKGRRGGNSICKGKKKETMGDKSGQSKVFLNKELQKLLEEWDYYLGTKNTKKNVDSVVLEVNDDDGVNRKDTRPQVCKETPPLYWSLGKKVEEAAPKSEEEEMICELWDEMDRVSREDEAESMIGNIGTIEASIKNLEDPFSVCKHDTRLDEEIGVYCRLCGLVVTEIRYISEPVVDRYPNEGSERRESIGGDDGSLFDRSHFNVSDDDDSNTNFYHNEGTVWDKIPDVKQTLYPHQQEGFEFIWKSLAGSIELQKLKNADPRSEGGCIISHAPGTGKTRLTIVFLKAYLQVFPKCMPIIVAPSSILLTWEEEFKKWDIGVPFHNLSNRELSGKEHADAVNTFDMSNKHHSIEETRMAKLILWFKETSILGISYHLYQRKCKDMKKKKHESVKERKGKFDMRKILLKAPGLLVLDEGHTPRNQRSHIWKVLSEIQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPDTIPPELKRFCHERGRKSSKEWSWEPVSCNTRNTSDDKINRLKLLMDPFVHVHKGVILENKLPGLRDCLVTLKPSSLQNEILKRIKRSQNKVFNFEYKISLASVHPSLLLECDLSEEEESELDKDQLEKIRLNPYEGVKTKFLCEFVRLCDSLNEKVLVFSQYHAPLRLIKDQLNSVFNWSDREVMFMSSDDPPKVKQSIIHSFNDENSKAKILLAATRACSEGISLVGASRVVFLDVVWNPSVKRQAISRAYGFAEKDRLSELLFSAKNVTDNDDVPKKRAVNFEDSVLDKMTRHEKLIDMFVKCVVLSKERDLV 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00969 1010 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 839 995 IPR001650 -
Trre13g00969 1010 MobiDBLite consensus disorder prediction 163 192 - -
Trre13g00969 1010 MobiDBLite consensus disorder prediction 42 128 - -
Trre13g00969 1010 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 487 692 IPR014001 -
Trre13g00969 1010 Gene3D - 433 734 IPR038718 -
Trre13g00969 1010 MobiDBLite consensus disorder prediction 42 61 - -
Trre13g00969 1010 SMART ultradead3 457 704 IPR014001 -
Trre13g00969 1010 SMART helicmild6 866 950 IPR001650 -
Trre13g00969 1010 MobiDBLite consensus disorder prediction 62 112 - -
Trre13g00969 1010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 950 IPR027417 -
Trre13g00969 1010 CDD SF2_C_SNF 833 947 - -
Trre13g00969 1010 Pfam Helicase conserved C-terminal domain 844 946 IPR001650 -
Trre13g00969 1010 Pfam SNF2-related domain 482 783 IPR000330 GO:0005524|GO:0140658
Trre13g00969 1010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 743 IPR027417 -
Trre13g00969 1010 Gene3D - 757 991 IPR027417 -
Trre13g00969 1010 MobiDBLite consensus disorder prediction 144 252 - -
Trre13g00969 1010 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 18 947 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00969 Trre-Chr13 7908006 7912249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00969 848 964 RAD5 or RAD16-like Gene Family AT5G05130 30.508 5.36e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g00969 SNF2_N 7.2e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00969 K10875 - gmx:100812737 749.199