Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00961 ATGGAGTTTGTCACTGAACTGTCAAAAGATGTTATCTCAACACTTGGAAAATTGGCAGTGTTGTCTACAATGAAGCAATTTGATTATGTGATCCATCACAAAAATATTATTTCCAAATTGAAGGAAGCACATGGCGAGTTGAAGGGTGTGAAAGAAGCAATGCAAGCATGGGTGGACACAAAAAAAATGAACAGAGAAGGAATTGAGCCAAACATACAAAAGTGGCTCAATGATATGGAAGCTTTTGAAAATGTGTTACAAAGGACTTTCAATGAAGAAGAAGTTAAAAAGAATGAGAAATGTTTTGGTGGAAAATGTCCAAATTTGGCAAATAATTATTCTTTGGGAAAGCGTGCTGCTAAAGGCATTGAATATATTGCAAGATTGAAGGAGGAAAAAAAAGAATTTCAGTTCATATCTTACCATAAACCTCCACCAACTGTTGGATCTACCTTCACAGAAGGTATTAAGAGCTTGAAGTCTAGGATGATGATTATGAATCAGGTGATAGAGAAACTGAAAGATGATAAGTTGAAAAGAATAAGCATATGTGGAATGGGTGGAGTGGGGAAAACCACACTTGCAAAAGAACTTATCAAATATGTAGAAAATAATAAATTATTTGATAAAGTTGTGATGGCAGTGGTATCCCAAAATCCTGATTACAAGAATATCCAAAATCAAATTGCTGATTGTTTAGGCATGAGTTTGAGAAGTAAAAGTGTGGAAGGAAGAGGAAGAGAAATAATACAGAAATTGAAGGAAATTGATGATGATGGAAAGACTAAAGTCCTAGTTGTACTCGACGATGTGTGGAGTGAGCTTAATTTTGATAAGGTAGGACTTCCATCTCGAGATGATCAAAAGTGTATTAAAATAATATTCACATCACGACATGAAAAAGAGTGTCAAAAGATGGGAAGCCAGATGAATTTTGATGTTTCTGTTTTGGTTGAGGATGAAGCTTGGTATCTATTTCAAGCAATTACAGGAGATGTTGTATATGAACCTGACATTTATCCAATAGCAAAACAGGTATCGAGGGAATGTGGAGACTTACCTTTTGCTATTGTAATTGTTGGAAAAGCGCTCAAGAATGAGAAAAAGCTTTCTACATGGGAGGTTGCATTGGAGCAATTAAAAAATTCTCAATCATCTACTTTCTCAGATGTGCACAAATTTGTTTATTCGCGCATCGAGCTTAGTTTGAATTTTTTGGGTAGCATAGAACACAAGAAGTTCCTTATGCTTTGTGGCTTGTTTCCAGAAGATTTTGATATACCTATTGAAAGTTTATCTCGTCAGGCAACAGGCTTGGGATTGTTCAAAGTTGATGGTGATACATGGAAAACAATCAATCAAGTGCATAGTTTGGTGGACGATCTAAAGAGATGTTGCTTATTGTTGGATAGCAACGTGCCCGGGTGTGTGAAGATGCATGATATTGTACGTGATGTCGTCATTCTAGTTACATTTAAAACAGATGAACACCGTCAGTTTATGGTGGAGTATGACATGAAGAGGCTCAGAAAAGAGAAACTGGATGACATCAATGCAATATCACTTATCTTGGATGATGAGACAATAGGGTTAGAGGACAAGTTAGAGTGTCCTACACTTCAACTTCTACGACTGCAATCAAAAAGAAAGGAACCAACTCAATGGCCTAAATCTTTCTTCCAAGGAATGAAATCACTTAAAGTTTTGTCTCTGCAAAGTTTGTACATTCCAAAATTTTCAACATTATCCCAAGCTTCAGTTAGCCTGCATACGCTGCAAGTAGAATACTGTGATGTTGGAGATATATCTATAATTGGTAAGGAACTTATACACCTAAAAGTCCTAAGCTTTGCACACTCTAATATTAAAGAACTCCCAATTGAAATAGGAAATTTGAGTGTTTTAAGATTATTGGATTTGACAAATTGCAATGATCTTAATGTCATTTCTGCCAATGTCTTGATAAGATTGTCTCAGTTGAAAGAACTATATTTGTGGATGGACAATTTTCCTTGGATTAAAAATGATGTGGCTATTTTAGTCAAAAAAAAAATGATGTGGCTATGA 2067 0.3546 MEFVTELSKDVISTLGKLAVLSTMKQFDYVIHHKNIISKLKEAHGELKGVKEAMQAWVDTKKMNREGIEPNIQKWLNDMEAFENVLQRTFNEEEVKKNEKCFGGKCPNLANNYSLGKRAAKGIEYIARLKEEKKEFQFISYHKPPPTVGSTFTEGIKSLKSRMMIMNQVIEKLKDDKLKRISICGMGGVGKTTLAKELIKYVENNKLFDKVVMAVVSQNPDYKNIQNQIADCLGMSLRSKSVEGRGREIIQKLKEIDDDGKTKVLVVLDDVWSELNFDKVGLPSRDDQKCIKIIFTSRHEKECQKMGSQMNFDVSVLVEDEAWYLFQAITGDVVYEPDIYPIAKQVSRECGDLPFAIVIVGKALKNEKKLSTWEVALEQLKNSQSSTFSDVHKFVYSRIELSLNFLGSIEHKKFLMLCGLFPEDFDIPIESLSRQATGLGLFKVDGDTWKTINQVHSLVDDLKRCCLLLDSNVPGCVKMHDIVRDVVILVTFKTDEHRQFMVEYDMKRLRKEKLDDINAISLILDDETIGLEDKLECPTLQLLRLQSKRKEPTQWPKSFFQGMKSLKVLSLQSLYIPKFSTLSQASVSLHTLQVEYCDVGDISIIGKELIHLKVLSFAHSNIKELPIEIGNLSVLRLLDLTNCNDLNVISANVLIRLSQLKELYLWMDNFPWIKNDVAILVKKKMMWL 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00961 688 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 38 668 - -
Trre13g00961 688 FunFam Probable disease resistance protein At1g61300 153 311 - -
Trre13g00961 688 SMART AAA_5 177 322 IPR003593 GO:0016887
Trre13g00961 688 Gene3D - 150 314 IPR027417 -
Trre13g00961 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 415 IPR027417 -
Trre13g00961 688 Gene3D - 403 488 IPR036388 -
Trre13g00961 688 Coils Coil 156 176 - -
Trre13g00961 688 PRINTS Disease resistance protein signature 630 646 - -
Trre13g00961 688 PRINTS Disease resistance protein signature 258 272 - -
Trre13g00961 688 PRINTS Disease resistance protein signature 180 195 - -
Trre13g00961 688 PRINTS Disease resistance protein signature 350 364 - -
Trre13g00961 688 SUPERFAMILY L domain-like 478 673 - -
Trre13g00961 688 Gene3D - 317 402 IPR042197 -
Trre13g00961 688 Gene3D Ribonuclease Inhibitor 526 682 IPR032675 -
Trre13g00961 688 Pfam NB-ARC domain 166 403 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00961 Trre-Chr13 7862386 7864452 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00961 161 422 WRKY Transcription Factor Family AT5G45050 27.368 1.93e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00961 - - mtr:11422687 1045.8