Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00959 ATGGAGTTTGTCACTGAACTGTCAAAAGATGTTATCTCAACACTTGGAAAATTGGCAGTGTTGTCTACAATGAAGCAATTTGATTATGTGATCCATCACAAAAATATTATTTCCAAATTGAAGGAAGCACATGGCGAGTTGAAGGGTGTGAAAGAAGCAATGCAAGCATGGGTGGGATCAAAAGAAATGAACAGAGAAGGAATTGAGCCAAACATACAAAAGTGGCTCAATGATATGGAAGCTTTTGAAAATGTGTTACAAAGGACTTTCAATGAAGAAGAAGTTAAAAAGAATGAGAAATGTTTTGGTGGAAAATGTCCAAATTTGGCAAATAATTATTCTTTGGGAAAGCGTGCTGCTAAAGGCATTGAATATATTGCAAGATTGAAGGAGGAAAAAAAAGGATTTCAGTTCATATCTTACCATAAACCTCCACCAACTGTTGGATCTACCTTCACAGAAGGTATTAAGAGCTTGAAGTCTAGGATGATGATTATGAATCAGGTGATAGAGAAACTGAAAGATGATAAGTTGAAAAGAATAAGCATATGTGGAATGGGTGGAGTGGGGAAAACCACACTTGCATATGAACTTATCAAATATGTAGAAAATACTAAGTTATTTGATAAAGTTGTGATGGCAGTGGTATCCCAAAATCCTGATTACAAGAATATCCAAAGTCAAATTGCTGATTGTTTAGGCATGAGGTTGAGAAGTGAAAGTGTGGAAGGAAGAGGAAGAGAAATAATACAGAAATTGAAGGAAATTGATGATGATGGAAAGACTAAAGTCCTAGTTGTACTCGACGATGTGTGGAGTGAGCTTAATTTTGATAAGGTAGGACTTCCATCTCGAGATGATCAAAAGTGTATTAAAATAATATTCACATCACGACATGAAAAAGAGTGTCAAAAGATGGGAAGCCAGATGAATTTTGATGTTTCTGTTTTGGTTGAGGATGAAGCTTGGTATCTATTTCAAGCAATTACAGGAGATGTTGTATATGAACCTGACATTTATCCAATAGCAAAACAGGTATCGAGGGAATGTAGAGACTTACCTCTTGCTATTGTAATTGTTGGAAAAGCGCTCAAGAATGAGAAAAAGCTTTCTACATGGGAGGTTGCATTGGAGCAATTAAAAAATTCTCAATCATCTACTCTCTCAATTGTTTATTCGAGCATCAAGCTTAGTTTGAATTTTTTGGGTAGCATACACAAGAAGTTCCTTATGCTTTGTGGCTTGTTTCCAGAAGATTTTGATATACCTATTGAAAGTTTATCTCGTCATGCAACAGGCTTGGGATTGTTCAAAGTTGATGGTGATACATGGAAAACAATCAATCAAGTGCATAGTTTGGTGGACGATCTAAAGAGATGTTGCTTATTGTTGGATAGCAACGTGCCCGGGTGTGTGAAGATGCATGATATTGTACGTGATGTCGTCATTCTAGTTACATTTAAAACAGATGAACACCACCAGTTTATGGTGGAGTATGACATGAAGAGGCTCAGAGAAGAGAAACTGGATGACATCAATGCAATATCACTTATCTTGGATGATGAGACAATAGGGTTAGAGGACAAGTTAGAGTGTCCTACACTTCAACTTCTACAACTGCAATCAAAAAGAAAGGAACCAACTCAATGGCCTAAATCTTTCTTCCAAGGAATGAAATCACTTAAAGTTTTGTCTCTGCAGAGTTTGTACATTCCAAAATTTTCAACATTATCCCAAGCTTCAGTTAGCCTGCATACGCTGCAAGTAGAATACTGTGATGTTGGAGATATATCTATAATTGGTAAGGAACTTATACACCTAAAAGTCCTAAGCTTTGCACACTCTAATATTAAAGAACTCCCAATTGAAATAGGAAATTTGAGTGTTTTAAGATTATTGGATTTGACAAATTGCAATGATCTTAATGTCATTTCTGCCAATGTCTTGATAAGATTGTCTCAATTGGAAGAACTATATTTGTGGATGGACAATTTTCCTTGGATTAAAAATGATGTGGCTATGAACGAGTTGAAACAGATATCTCATCAACTAAAGGTTGTCGAGATGAAAGTTAGAGAGGTTGAATTTTTAGTCATGGATTTGGACTTATGCAACCTGCAAAAGTTTTGGATTTTTGTTGATCCTTATACTCGTTTTCGCCGCTCTGCATATTTGGAGTCAAACTTATTGCAAGTTAGTGCTATTGATTATCAATTTGTTAATAGGATAATGATAGTCTCACATTTGATAAAGAAATGTGAAATCCTTGCAATAAGAAACATGAAAGACTTGAAAAATGTTATGACTCAATTATTATGTGATTGTCCAAGTCCATACTTGAAAGATTTAAGGGTTGATTCGTGTCCTGATTTGGTGTTTCTGATAGACACTACTGTTTACTGCAATGGTTTTCCAAATATCCGGTCACTGTCTTTGAAAAATCTTCCGAATTTTAAGGAGATGTGTTATGCATCTAATAATGGTGAATTGAATTCACCTCATCGGATGCAACTATTTCCAAAATTGGAAACAATCTTGCTACAAGATTGTTCTTCAATTAATGTGGTGTTTGACACACATGTAAATGGCCAAGTATTTCCTCAATTGAAAGAAATAAAGATAGCTGGACTTCATCAACTAACACATGTGTGGAGGAGTAATAAAGCTATGCATTGTGTTCAAGGTTTTCAAAATTTGAAAATCTTGACAATATCTTATTGTGACTCTTTGAGATATGTATTTAATCTATCTATTATTGGAGCAATCACCAATATTGAGGAATTGAATATAAAATGTTGCAAGTTGATGGAGTATTTAGTGAGTGATGATGATGAAGAAGAAGAAGGTGGTCACAAAAACAAAGAGAAAGAAAACATTGTTTCGTTTGAAAAGTTATATTCCTTAACACTTTCAGGACTCCCAAGTATTGCATGTGTTTGTACAAATTCTTATGAGATACAATTTCCATCCTTAAGAAAGTTGGAAATTGATGATTGTCCAAAGCTAGATATATTGGTTTTTCTAACTACATCTCATTCAAGCATTGAAGAGGACACTAGTTTTAACAATTGTGAAGGAAACAATTCAAGATCTTCTAATTGGCAATTTGGATGTACACCATTTTGTTCTAAGAAAATCAATAAGACTTGTTCCACTTCTGAAAGGAGAACCAAGATAGAGTTCAAGGGTGCATCTCTTCTTCAAGAACTTAATGTGAAGAATTGTGATTTGCATCAGTGTCTTGTTATAGACAGCTACTTGTATTCAAATTTAAAATCACTAACCGTGCGGGGCTGTGACAGAATAAGTGTCTTGTTATCTTTTCCGTCCATGAGATGTCTTGAGCAACTAGAGAAACTAGACATAACTGAATGCAAAAACTTAAATGAGATAGTATGTCAAGAAGAATCGGAAGCAAATGGAGAAAAGATCATCATCTTCCCTGCATTGCAAGATCTAATTCTTAAAGACCTTCCAAAACTCAAGGCTTTCTTCCATGGTCCCTATAATCTTGATTTTCCATCACTGCAAAAAGTGTCCATATTCAACTGTCCCAATATGGAAGTGTTTTCGGGAGGAGTTTCTAGTATGCCTGAGCTTAAGGATGTCAGCGTATGGAATGAATTACTCGACAACTACTCCATACACAAGGATGACATAAATGTCACTATACAACAATTTAAAACATTTGTGGAATTACAAAAATGTGAGATGTTGAACTTCAAGGAGCTACTTGATAAAGGCATGTTTGGATACTTTATCAAACAAAAAGAAATGAAGATCATAAATTTTCAAAGATTATCAATGCTTGTACCATTCAGTGAGATAAAAATGCTTCAACATGTGAGGAAACTGTTTGTAAGTAGTTGTGATGAATTGATTGAAGTGTTTGAATCAGTTACAGAAAAAAGGGATGCCATCACACATTATCAGCTACAAGAGATGACATTGTATAGGTTGCCAAGATTGAGTCGCATTTGGAACCACAATAACATAGAGGTTGTAAGCTTCAAAAATCTAACAAAATTAAAAGTTAACAATTGCCCCAATTTGAAGAGTTTGCTCTCGTACTCTATGGCTAGAAGCCTTGTGCAACTTCAAACTATAGAAGTTTCGAATTGTGAAATGATGGAGGAGATAATAACAAAGGGAGAGAAATATATAGAAGGAGACAACAAAGTTAAGACTTTACTACCTAAGTTGGAGGAATTAAGACTTTCTAATCTTCCTAAGTTAGAATGTGTTTGTTCAGTAGATTATGACTATGATATCCCTTTTTTCACTGATGAAGAGGACAACAAATTCAACAATAATGATAAGGTTCAAATTTTATTTCCAGAATTAAAGAAATTAAGTTTTTATGAAGTACCGAAGCTCAAGTGTTTTTGTTCAGGAGTGTACACCTACGATATCAGGTTTCTGTCAGTTGAAGAGTGTCCTAATATGAGAACCTTTCCCTTTCGAAATGTTATCGTAAACACACCAAACCTTCATTGGCTAAGTTGGGATCCGGTGAATATGTACACACATGGAGATGTTAATTTGACAATATATTATCACCAGAATCCAGAGAAATACATGGTGGCGTTGCAAAAATTAAAGACATTTAGAAATATTGTCGACAAAGAGCTTATTGGCTACATAAAAAGAGTAACAAGCCTTGACATTGTAAACTGTCACAATCTACTGAGTTGCATTCCATCCAACATGATGCAATTATTTTCACATTTGAATTTTCTCATAGTGAAAGAATGTGATTGCTTGGAAGAGATATTTGAAACAAATGATTACATGTTGCAATGTGAACTATGGATCTTACACTTGTTTTCTCTTCCAAAACTGAAGCACATATGGAAAAATCAAGGTGGTCAAATTGTAGGATTCAAGTGTTTAGAATTGATAATCATCGATGGGTGCAATGATTTGGAACATGTGTTTCCCGATGTTTCTGTGGTCACAAGCCTTCCAAATTTGCATAGGATTTCTGTGTATAATTGTGAGAAGATGAAGAAGATCATTGGAAATAATTGCAATCCTATTAATTATTTAGGACATAATGCTAAGATTAAATTCCCAAAAAGTTTAAAGCAAATTGGTCTAGTCGGGCTTCCCAGCCTCGAATGTTTCGGTCAAAGCAATTTCCCTTGCTATGTTGAGATGTCAAATTGTAATTGGATATGGATTGAAGACTGCCCAAAGATGAAGACTTTCTGGCATGATGGAATCTTATACACACCAAATCTTGACTGTGTTTATGTGGACGCAAGGTATAGATTCAAAAATGAAGATGTGAATGAAGTGATACAGCGATATTATAAATGA 5322 0.3482 MEFVTELSKDVISTLGKLAVLSTMKQFDYVIHHKNIISKLKEAHGELKGVKEAMQAWVGSKEMNREGIEPNIQKWLNDMEAFENVLQRTFNEEEVKKNEKCFGGKCPNLANNYSLGKRAAKGIEYIARLKEEKKGFQFISYHKPPPTVGSTFTEGIKSLKSRMMIMNQVIEKLKDDKLKRISICGMGGVGKTTLAYELIKYVENTKLFDKVVMAVVSQNPDYKNIQSQIADCLGMRLRSESVEGRGREIIQKLKEIDDDGKTKVLVVLDDVWSELNFDKVGLPSRDDQKCIKIIFTSRHEKECQKMGSQMNFDVSVLVEDEAWYLFQAITGDVVYEPDIYPIAKQVSRECRDLPLAIVIVGKALKNEKKLSTWEVALEQLKNSQSSTLSIVYSSIKLSLNFLGSIHKKFLMLCGLFPEDFDIPIESLSRHATGLGLFKVDGDTWKTINQVHSLVDDLKRCCLLLDSNVPGCVKMHDIVRDVVILVTFKTDEHHQFMVEYDMKRLREEKLDDINAISLILDDETIGLEDKLECPTLQLLQLQSKRKEPTQWPKSFFQGMKSLKVLSLQSLYIPKFSTLSQASVSLHTLQVEYCDVGDISIIGKELIHLKVLSFAHSNIKELPIEIGNLSVLRLLDLTNCNDLNVISANVLIRLSQLEELYLWMDNFPWIKNDVAMNELKQISHQLKVVEMKVREVEFLVMDLDLCNLQKFWIFVDPYTRFRRSAYLESNLLQVSAIDYQFVNRIMIVSHLIKKCEILAIRNMKDLKNVMTQLLCDCPSPYLKDLRVDSCPDLVFLIDTTVYCNGFPNIRSLSLKNLPNFKEMCYASNNGELNSPHRMQLFPKLETILLQDCSSINVVFDTHVNGQVFPQLKEIKIAGLHQLTHVWRSNKAMHCVQGFQNLKILTISYCDSLRYVFNLSIIGAITNIEELNIKCCKLMEYLVSDDDEEEEGGHKNKEKENIVSFEKLYSLTLSGLPSIACVCTNSYEIQFPSLRKLEIDDCPKLDILVFLTTSHSSIEEDTSFNNCEGNNSRSSNWQFGCTPFCSKKINKTCSTSERRTKIEFKGASLLQELNVKNCDLHQCLVIDSYLYSNLKSLTVRGCDRISVLLSFPSMRCLEQLEKLDITECKNLNEIVCQEESEANGEKIIIFPALQDLILKDLPKLKAFFHGPYNLDFPSLQKVSIFNCPNMEVFSGGVSSMPELKDVSVWNELLDNYSIHKDDINVTIQQFKTFVELQKCEMLNFKELLDKGMFGYFIKQKEMKIINFQRLSMLVPFSEIKMLQHVRKLFVSSCDELIEVFESVTEKRDAITHYQLQEMTLYRLPRLSRIWNHNNIEVVSFKNLTKLKVNNCPNLKSLLSYSMARSLVQLQTIEVSNCEMMEEIITKGEKYIEGDNKVKTLLPKLEELRLSNLPKLECVCSVDYDYDIPFFTDEEDNKFNNNDKVQILFPELKKLSFYEVPKLKCFCSGVYTYDIRFLSVEECPNMRTFPFRNVIVNTPNLHWLSWDPVNMYTHGDVNLTIYYHQNPEKYMVALQKLKTFRNIVDKELIGYIKRVTSLDIVNCHNLLSCIPSNMMQLFSHLNFLIVKECDCLEEIFETNDYMLQCELWILHLFSLPKLKHIWKNQGGQIVGFKCLELIIIDGCNDLEHVFPDVSVVTSLPNLHRISVYNCEKMKKIIGNNCNPINYLGHNAKIKFPKSLKQIGLVGLPSLECFGQSNFPCYVEMSNCNWIWIEDCPKMKTFWHDGILYTPNLDCVYVDARYRFKNEDVNEVIQRYYK 1773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00959 1773 Pfam NB-ARC domain 166 396 IPR002182 GO:0043531
Trre13g00959 1773 Gene3D - 395 483 IPR036388 -
Trre13g00959 1773 Gene3D Ribonuclease Inhibitor 1526 1754 IPR032675 -
Trre13g00959 1773 SMART AAA_5 177 322 IPR003593 GO:0016887
Trre13g00959 1773 Gene3D Ribonuclease Inhibitor 1082 1416 IPR032675 -
Trre13g00959 1773 Gene3D Ribonuclease Inhibitor 790 1081 IPR032675 -
Trre13g00959 1773 Coils Coil 156 176 - -
Trre13g00959 1773 Gene3D - 151 314 IPR027417 -
Trre13g00959 1773 Gene3D - 316 394 IPR042197 -
Trre13g00959 1773 PRINTS Disease resistance protein signature 350 364 - -
Trre13g00959 1773 PRINTS Disease resistance protein signature 180 195 - -
Trre13g00959 1773 PRINTS Disease resistance protein signature 625 641 - -
Trre13g00959 1773 PRINTS Disease resistance protein signature 258 272 - -
Trre13g00959 1773 SUPERFAMILY L domain-like 529 1015 - -
Trre13g00959 1773 Gene3D Ribonuclease Inhibitor 526 776 IPR032675 -
Trre13g00959 1773 SUPERFAMILY RNI-like 966 1414 - -
Trre13g00959 1773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 413 IPR027417 -
Trre13g00959 1773 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1217 1463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00959 Trre-Chr13 7834767 7840404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00959 161 481 WRKY Transcription Factor Family AT5G45050 26.647 8.66e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00959 - - mtr:11422687 1758.04