Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00958 ATGTCCTTCAATCAATCAAAGTCCGATAAGAGCGACACAGCTTACCGACGAACCGGTCGATCAACCAGCTTCAATCAGCAGCGAGGTAACACCGGTGGTTCATACGTTAAGGCCGGCACCGGCGCCGCCGCGCCTTCACCATCATTCTCCTCTTCTCGGAGTTTTAACAAGAAGTCTAATAATCATGCACAAGGTGGACCATCTAGGGTAAATCCCACCCAGGCGAATTCAGCCGAGTCTAATTATGCTTCTGCAGTCCGAGCAACACCGAATGGTTCCCATGTACAGCCGCAATTTCACGGAGGGTCTGATGCATCAGTTACAAATGCAACTGCCAAGCCGTCTGAATCATCAGCTGCACAGAGGAGCACCAGAGCTGTTCCTAAAGCTCCTATTTCTAAACCTCCCCCCGTGAGTTCTGATTCAGCAGCACCTACAACACCTGCTAAGGATGCATCCAACGCATTCCCTTTCCAATTTGGATCTATTAGTCCTGGCATTGTGAATGTGATGACAATTCCTGCTCGCACAAGCTCGGCTCCTCCTAATATAGATGAGCAAAAGCGTGATCAGGCTCGTCATGATTCTCTAAGGCCTGTGCCTTCTGTGCCAACACCTACGATTCCAAAGCAGCTGCCAGCAAAAAAGGATACTGGTGTCACCGAACAATCTAAGGTTGGGGAGACTCATACCGGTACAAGGGCAAAAAAGGATACTCAAGTGTCACCTTTACCCCCAGCAAGCCTTATGCAGAATCATTCTGTTGTTCCTCTAACGGGAATGTCGATGCCAATGCCATATCACCACCAGTCACAGGCACCCGTGCACTATGGTGCTGCTAATCCACAAATTCAATCTCATGGTATGTCAACAGCACCTCTTCAGATGCCTTTAATGTCTTTTCCAATTGGAAACGCTGCACAAGTGCAACAACCGGTATTTGTTCCAAGTCTTCAACCTCATCCTATCCATCCTCAAGGAATGATTCATCAACATCAAGGCCAAAATATTGGTTACATTCCTCAAATGGGTCATCAATTTCCCCATCAGTTTGCCAACATGGGTATGGGCATCAACCCACAATATTCCCCACAGCAAGGAGGAAAATTTCCTGGGCCTCGTAAAACTACTCCTGTGAAAATAACTCACCCTGATACCCACGAAGAGCTTAGACTTGATAGAAGGGCAGATGATGGTGGGTCATCGGGTGCTAGGTCTCATTCTAGCATGCCTTCTCAATCTCCATCTGTCAAGTCATTTGCTGCTTCTCATGCCAACGCTCAGCCACCAAGAATTAATTATGCTGTGAACCATGGTCCACAATTATCATCACATAATACCCTGCCTGGCAATAAAGTTGTTACTTCTATTCCTGGCAATGTTGAACAACGTAGTCAAGAAATTTCTCGTGATATGCCTAATGCAAATTCATCAACTATTTTAGGAGTATCTTCTGTATCTATAAAGCCAAGTGGTGGGTCTGGTGTTGTGGACTCATCATTTGCCAATTCCAGTAATTCTGGTGATCAAAAGGGTGGATCTCCTAGTTCCCCAGTAACATCTAGTGATGTTTACTCTTTGGTGCCGCCAAAAGGACCTGAAACTTGTTCTGAAATCCCTTCCCAACAATCTACTGCTGCATCTGTTTCTGCTGAGAAGCTTACACCAGCTTCCTTGGTGCCTTCTTCAACGGCTTTTAGTGAGAATTCTGTTTCTGCTCTTAATGAAGGCAGAAACAAGGAATCTCTTAGTAGATCAAATTCTTTGAAGGATAATCAGAAGAAACCGGAGAAGAAAGGCCAATTGCAACATCAGGTGGCTGTACAATCTTCTGCTGTGGCTAATGAACCTTCTCTAGCTGTTGATGGTGGTATCTCTGATTGTGTAGTTTCTGAAATTGTAGGAACTAAAACACCCTATTCTGCAGTAACTGCCAATGAAGATCTATCAGCAATAGCTTCTGGCACATTTTCTGCTACCCGTGAGAGCAAGCCTTCTTCTGTTGAAGAGAAGACCACTGGTTCTACACAGGTGTCTGCTACTGCTTCAGCTGAAGGACCTGTTACTCAAGCTGTGGATAGTTTGAACAATCATAAGAGTGATGAGCTAGATGTATTATCTCGAGAGGATAAACAGTTGAGGCAGAACAAATTAGTCGGTGATAAACCTGAAATTTCAACTCTGCAGATAAGTAAAATTGTCAATGATGACGGCGGAGAAATTAGCCACCTCAAAAACGGTGCTTCAGAGGTAAGCACTGGGGTTGTAACTTTGAGTACTGGGCTGCAGGTACAGGATGAAATTGAATCTGTAGGTTGCAGCATAGACTGTGACAGGATGGATGATAATTTAGGCACGTCTACTTCTGCAGAGAATTCTAAAGATGCATCTTTAAGCAGAAACGGCAGTGTAGTTGGTAAAGAAGTCACTTCTATAGATTATGGCACATCAGATCATCAATCTTCTGGTGATCTTGAAACAAATTTAAAACATTGCAAGGATAGTTCAGAGGATTCTGGCACTGGCTCAGCGTCTCTTCCAGCAGCATCTGTTACTATGGACAGACCTATTTTAGAGCCAAGTAAGGTGAAAGGTACATCAAAGGGGAAGAAGAAACTAAAGGAGTTTCTTCAGAAAGCTGATGCTTCTGGATCAACCACTGACCTGTATAACGCGTATAAGGGACCTGAGGAAAAGAAAGAAGCTGTTGCAAGTTCAGAGACTGCTGGAAATTCGAAGCAGCTGCCTATGGATGCTCCTCAGCCAGCTGCTGTTGAAAATGAACAATGTGGGGAGAGTAAGGCTGAACTTGAGGACTGGGAAGATGCTGCCGATATATCCGCTCCTAAGTTAGAAGTATCAGATAAAACTCAACAGGACAGCAATGGAAGTACTGACAAAAAGTACTCTCGGGATTTCCTTTTAAAATTTGCAGAGCAATGCTCTGAGCTTCCCAAAGGGTTTGAAATCACGGCAGACATAGCTGAAGCTTTGATGGGTTCGAATATTAGTTCTCATGTTATTGTACGCGATGCACATCCTTCTCCCGGAAGAAATACAGATAGGTCAGGTGGGATGCCTCGGATGGATCGTCGTGGGAGTGGTGTTATTGAGGATGATAAATGGAATAAAGTGTCTGGTGCTTTTCATTCTGGCATGCGTTTGGATGGTAGTGGAGGTAATACAGATTTCAGACCTGGTCAAGGAAGCAATTTTGGTGTTTTAAGGAATCCACGCCCACAGGGAGCTATGCAATATGGTGGAGCAATTCTTTCTGGGCCAATGCAATCCATGGGAAACCAGGGAGGAATGCCAAGAAATAGCCCTGATGGAGAAAGGTGGCAGCGAGGTGCTAACTTCCAGCAGAGGGGTTTGATTCCATCTCCTTCTTCTCAATCTCCTTTGCAGACGATGCACAAAGCTGAGAAGAAGTATGAGGTGGGTAAAGTGACAGATGAGGAACAGGCGAAGCAGAGGCAGTTGAAAGGTATATTGAACAAGTTAACTCCCCAGAATTTTGAGAAGCTTTTTGAGCAGGTTAAAGCAGTTAATATTGACAATGTAGTCACTCTCACTGGTGTTATCTCACAAATCTTTGAGAAGGCCTTGATGGAACCCACCTTCTGTGAAATGTATGCCAATTTCTGTTTTCATTTGGCTGCTGCGTTGCCTGATCTCAGTCAAGACAATGAAAAGATAACATTTAAGAGATTATTGTTAAATAAGTGCCAGGAAGAATTTGAGAGGGGTGAGAGAGAGCAAGAAGAAGCTGATAAAGCTGATGAGGGTGAGGTTAAACAGTCTGATGAGGAAAGAGAAGCGAAACGATCCAAGGCTAGAAGACGAATGTTGGGTAATATCAGGTTAATTGGAGAACTATATAAGAAGAGAATGCTGACAGAGAGGATAATGCACGAGTGCATAAAAAAGTTACTGGGTCAGTGTCAGACTCCAGATGAAGAAGATATCGAAGCTTTGTGCAAACTGATGAGTACTATTGGGGAGATGATTGACCACCCCAAAGCCAAGGAACACATGGATGCATATTTTGAAAGGATTAAATTATTGTCAAACAACATGAATTTATCTTCGAGGGTGAGGTTCATGTTAAAGGATACCATTGATTTGAGAAAGAATAGATGGCAACAAAGGAGAAAAGTTGAAGGTCCAAAGAAGATTGAAGAGGTGCATCGGGATGCTTCTCAAGAGAGGCAATCCCAAGCTGGTAGACTGGGTCGTGGTATGGGTATTAGTTCACCAAGAAGGCCGCCTATGGATTTTGGTTCAAGAGGTTCATCTATGTTATCCCCTCCTAATGCTCAAATGGGTGGATTGCCTAATCAAATTCGTGGGTATGGTTCTCAGGATGTTCGTGGATATGAAAGGCAATCTTATGAGGCTAGGCCACTATCTATTCCCTTGCTTCAAAGATCTTCAGGTGATGAGTTAATAACCTTGGGACCCCAAGGTGGTCTTGCTAGGGGAATGGCCAGTAGAGGTCCACCTGCTGCTTCCAGTTTTGGCGGTCCTAATGGTTACAGTAATTTATCTGAGCGCCCTTCATACAGCCCTAGGGAGGACCTCACACCAAGATATGTTCCAAATAGATTTGCTGGTCCAACTACTTATGATCAATCAAGTGCTCCTGAGCAAAGTGTGAATTACAGTAACAGGGATTTGGGAAATGCAGATAGGTTTCTTGATAGACCTGTTGTACATCCACCTCCTGCCCGAGCACAAGAGACAGCACTCTCCCAGAATACCTCTTCAGAAAAGGGTTTGTCAGATGCGAAACTACAGAACATGTCCATGGCAGCAATTAAAGAATACTATAGTGCTAGAGATGTGAACGAAGTTGTTTTGTGCGTCAAAGATCTGAACTCTCCGAGCTTTCATCCTTCCATGGTTTCTCTTTGGGTGTCTGATTCATTTGAGAGAAAGGATACAGAGAGAGATCTTTTGGCCAAACTTTTGATCGACCTTGTGAAATCTCATGGCGGTACCTTAAGTCAAGCCCAGCTCTTCAAAGGGTTTGAATTTGTTCTAAGTACTTTGGAAGATGTGGTTACGGATGCCCCAAGAGCACCGGAGTATCTTGGTCGCATTTTTGCCAAAGCTATAACAGAGCATGTAGCCTCTTTGAAAGAGATTGGGCAGTTAATACGTGACGGCAGAGAGGAATCAAGTAGCCGCTTACAAATTGGACTTTCAGCTGACATTCTCGGAAGTACCTTGGAAGTGATACAAACAGAGAAGGGCGATGCATTCTTGAATGAGATCCAGACAAGCTCCAACTTGCAATTGCAGACCTTCCGTCCGCCAGAACCTATTAAATCCCGGAAACTAGAAAAATTCCTTTAG 5361 0.4419 MSFNQSKSDKSDTAYRRTGRSTSFNQQRGNTGGSYVKAGTGAAAPSPSFSSSRSFNKKSNNHAQGGPSRVNPTQANSAESNYASAVRATPNGSHVQPQFHGGSDASVTNATAKPSESSAAQRSTRAVPKAPISKPPPVSSDSAAPTTPAKDASNAFPFQFGSISPGIVNVMTIPARTSSAPPNIDEQKRDQARHDSLRPVPSVPTPTIPKQLPAKKDTGVTEQSKVGETHTGTRAKKDTQVSPLPPASLMQNHSVVPLTGMSMPMPYHHQSQAPVHYGAANPQIQSHGMSTAPLQMPLMSFPIGNAAQVQQPVFVPSLQPHPIHPQGMIHQHQGQNIGYIPQMGHQFPHQFANMGMGINPQYSPQQGGKFPGPRKTTPVKITHPDTHEELRLDRRADDGGSSGARSHSSMPSQSPSVKSFAASHANAQPPRINYAVNHGPQLSSHNTLPGNKVVTSIPGNVEQRSQEISRDMPNANSSTILGVSSVSIKPSGGSGVVDSSFANSSNSGDQKGGSPSSPVTSSDVYSLVPPKGPETCSEIPSQQSTAASVSAEKLTPASLVPSSTAFSENSVSALNEGRNKESLSRSNSLKDNQKKPEKKGQLQHQVAVQSSAVANEPSLAVDGGISDCVVSEIVGTKTPYSAVTANEDLSAIASGTFSATRESKPSSVEEKTTGSTQVSATASAEGPVTQAVDSLNNHKSDELDVLSREDKQLRQNKLVGDKPEISTLQISKIVNDDGGEISHLKNGASEVSTGVVTLSTGLQVQDEIESVGCSIDCDRMDDNLGTSTSAENSKDASLSRNGSVVGKEVTSIDYGTSDHQSSGDLETNLKHCKDSSEDSGTGSASLPAASVTMDRPILEPSKVKGTSKGKKKLKEFLQKADASGSTTDLYNAYKGPEEKKEAVASSETAGNSKQLPMDAPQPAAVENEQCGESKAELEDWEDAADISAPKLEVSDKTQQDSNGSTDKKYSRDFLLKFAEQCSELPKGFEITADIAEALMGSNISSHVIVRDAHPSPGRNTDRSGGMPRMDRRGSGVIEDDKWNKVSGAFHSGMRLDGSGGNTDFRPGQGSNFGVLRNPRPQGAMQYGGAILSGPMQSMGNQGGMPRNSPDGERWQRGANFQQRGLIPSPSSQSPLQTMHKAEKKYEVGKVTDEEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNVVTLTGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEADKADEGEVKQSDEEREAKRSKARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQCQTPDEEDIEALCKLMSTIGEMIDHPKAKEHMDAYFERIKLLSNNMNLSSRVRFMLKDTIDLRKNRWQQRRKVEGPKKIEEVHRDASQERQSQAGRLGRGMGISSPRRPPMDFGSRGSSMLSPPNAQMGGLPNQIRGYGSQDVRGYERQSYEARPLSIPLLQRSSGDELITLGPQGGLARGMASRGPPAASSFGGPNGYSNLSERPSYSPREDLTPRYVPNRFAGPTTYDQSSAPEQSVNYSNRDLGNADRFLDRPVVHPPPARAQETALSQNTSSEKGLSDAKLQNMSMAAIKEYYSARDVNEVVLCVKDLNSPSFHPSMVSLWVSDSFERKDTERDLLAKLLIDLVKSHGGTLSQAQLFKGFEFVLSTLEDVVTDAPRAPEYLGRIFAKAITEHVASLKEIGQLIRDGREESSSRLQIGLSADILGSTLEVIQTEKGDAFLNEIQTSSNLQLQTFRPPEPIKSRKLEKFL 1786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00958 1786 MobiDBLite consensus disorder prediction 784 871 - -
Trre13g00958 1786 Pfam MIF4G domain 1158 1379 IPR003890 GO:0003723|GO:0005515
Trre13g00958 1786 MobiDBLite consensus disorder prediction 491 524 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 1539 1559 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 1010 1034 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 177 250 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 1250 1278 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 886 967 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 380 401 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 1490 1595 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 784 806 - -
Trre13g00958 1786 FunFam Eukaryotic translation initiation factor 4G 1158 1393 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 358 456 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 17 34 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 1 151 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 44 124 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 402 423 - -
Trre13g00958 1786 SUPERFAMILY ARM repeat 1152 1382 IPR016024 -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 583 601 - -
Trre13g00958 1786 SUPERFAMILY ARM repeat 1592 1781 IPR016024 -
Trre13g00958 1786 ProSiteProfiles MI domain profile. 1598 1722 IPR003891 -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 536 582 - -
Trre13g00958 1786 Pfam MA3 domain 1605 1709 IPR003891 -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 1383 1453 - -
Trre13g00958 1786 FunFam Eukaryotic translation initiation factor 4G 1592 1785 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 1383 1404 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 1580 1595 - -
Trre13g00958 1786 Gene3D - 1590 1786 - -
Trre13g00958 1786 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 359 1786 IPR045208 GO:0003743
Trre13g00958 1786 MobiDBLite consensus disorder prediction 656 688 - -
Trre13g00958 1786 SMART if4_15 1158 1380 IPR003890 GO:0003723|GO:0005515
Trre13g00958 1786 MobiDBLite consensus disorder prediction 931 949 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 437 456 - -
Trre13g00958 1786 Gene3D - 1158 1393 - -
Trre13g00958 1786 SMART ma3_7 1599 1713 IPR003891 -
Trre13g00958 1786 Coils Coil 1240 1260 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 491 607 - -
Trre13g00958 1786 MobiDBLite consensus disorder prediction 1508 1522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00958 Trre-Chr13 7824977 7833618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00958 1 1785 Eukaryotic Initiation Factors Gene Family AT3G60240 43.568 0.0 1201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00958 K03260 - gmx:100796636 2346.24