Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00957 ATGTCCTTCAATCAATCAAAGTCCGATAAGAGCGACACAGCTTACCGACGAACCGGTCGATCAACCAGCTTCAATCAGCAGCGAGGTAACACCGGTGGTTCATACGTTAAGGCCGGCACCGGCGCCGCCGCGCCTTCACCATCATTCTCCTCTTCTCGGAGTTTTAACAAGAAGTCTAATAATCATGCACAAGGTGGACCATCTAGGGTAAATCCCACCCAGGCGAATTCAGCCGAGTCTAATTATGCTTCTGCAGTCCGAGCAACACCGAATGGTTCCCATGTACAGCCGCAATTTCACGGAGGGTCTGATGCATCAGTTACAAATGCAACTGCCAAGCCGTCTGAATCATCAGCTGCACAGAGGAGCACCAGAGCTGTTCCTAAAGCTCCTATTTCTAAACCTCCCCCCGTGAGTTCTGATTCAGCAGCACCTACAACACCTGCTAAGGGAGATGCATCCAACGCATTCCCTTTCCAATTTGGATCTATTAGTCCTGGCATTGTGAATGTGATGACAATTCCTGCTCGCACAAGCTCGGCTCCTCCTAATATAGATGAGCAAAAGCGTGATCAGGCTCGTCATGATTCTCTAAGGCCTGTGCCTTCTGTGCCAACACCTACGATTCCAAAGCAGCTGCCAGCAAAAAAGGATACTGGTGTCACCGAACAATCTAAGGTTGGGGAGACTCATACCGGTACAAGGGCAAAAAAGGATACTCAAGTGTCACCTTTACCCCCAGCAAGCCTTATGCAGAATCATTCTGTTGTTCCTCTAACGGGAATGTCGATGCCAATGCCATATCACCACCAGTCACAGGCACCCGTGCACTATGGTGCTGCTAATCCACAAATTCAATCTCATGGTATGTCAACAGCACCTCTTCAGATGCCTTTAATGTCTTTTCCAATTGGAAACGCTGCACAAGTGCAACAACCGGTATTTGTTCCAAGTCTTCAACCTCATCCTATCCATCCTCAAGGAATGATTCATCAACATCAAGGCCAAAATATTGGTTACATTCCTCAAATGGGTCATCAATTTCCCCATCAGTTTGCCAACATGGGTATGGGCATCAACCCACAATATTCCCCACAGCAAGGAGGAAAATTTCCTGGGCCTCGTAAAACTACTCCTGTGAAAATAACTCACCCTGATACCCACGAAGAGCTTAGACTTGATAGAAGGGCAGATGATGGTGGGTCATCGGGTGCTAGGTCTCATTCTAGCATGCCTTCTCAATCTCCATCTGTCAAGTCATTTGCTGCTTCTCATGCCAACGCTCAGCCACCAAGAATTAATTATGCTGTGAACCATGGTCCACAATTATCATCACATAATACCCTGCCTGGCAATAAAGTTGTTACTTCTATTCCTGGCAATGTTGAACAACGTAGTCAAGAAATTTCTCGTGATATGCCTAATGCAAATTCATCAACTATTTTAGGAGTATCTTCTGTATCTATAAAGCCAAGTGGTGGGTCTGGTGTTGTGGACTCATCATTTGCCAATTCCAGTAATTCTGGTGATCAAAAGGGTGGATCTCCTAGTTCCCCAGTAACATCTAGTGATGTTTACTCTTTGGTGCCGCCAAAAGGACCTGAAACTTGTTCTGAAATCCCTTCCCAACAATCTACTGCTGCATCTGTTTCTGCTGAGAAGCTTACACCAGCTTCCTTGGTGCCTTCTTCAACGGCTTTTAGTGAGAATTCTGTTTCTGCTCTTAATGAAGGCAGAAACAAGGAATCTCTTAGTAGATCAAATTCTTTGAAGGATAATCAGAAGAAACCGGAGAAGAAAGGCCAATTGCAACATCAGGTGGCTGTACAATCTTCTGCTGTGGCTAATGAACCTTCTCTAGCTGTTGATGGTGGTATCTCTGATTGTGTAGTTTCTGAAATTGTAGGAACTAAAACACCCTATTCTGCAGTAACTGCCAATGAAGATCTATCAGCAATAGCTTCTGGCACATTTTCTGCTACCCGTGAGAGCAAGCCTTCTTCTGTTGAAGAGAAGACCACTGGTTCTACACAGGTGTCTGCTACTGCTTCAGCTGAAGGACCTGTTACTCAAGCTGTGGATAGTTTGAACAATCATAAGAGTGATGAGCTAGATGTATTATCTCGAGAGGATAAACAGTTGAGGCAGAACAAATTAGTCGGTGATAAACCTGAAATTTCAACTCTGCAGATAAGTAAAATTGTCAATGATGACGGCGGAGAAATTAGCCACCTCAAAAACGGTGCTTCAGAGGTAAGCACTGGGGTTGTAACTTTGAGTACTGGGCTGCAGGTACAGGATGAAATTGAATCTGTAGGTTGCAGCATAGACTGTGACAGGATGGATGATAATTTAGGCACGTCTACTTCTGCAGAGAATTCTAAAGATGCATCTTTAAGCAGAAACGGCAGTGTAGTTGGTAAAGAAGTCACTTCTATAGATTATGGCACATCAGATCATCAATCTTCTGGTGATCTTGAAACAAATTTAAAACATTGCAAGGATAGTTCAGAGGATTCTGGCACTGGCTCAGCGTCTCTTCCAGCAGCATCTGTTACTATGGACAGACCTATTTTAGAGCCAAGTAAGGTGAAAGGTACATCAAAGGGGAAGAAGAAACTAAAGGAGTTTCTTCAGAAAGCTGATGCTTCTGGATCAACCACTGACCTGTATAACGCGTATAAGGGACCTGAGGAAAAGAAAGAAGCTGTTGCAAGTTCAGAGACTGCTGGAAATTCGAAGCAGCTGCCTATGGATGCTCCTCAGCCAGCTGCTGTTGAAAATGAACAATGTGGGGAGAGTAAGGCTGAACTTGAGGACTGGGAAGATGCTGCCGATATATCCGCTCCTAAGTTAGAAGTATCAGATAAAACTCAACAGGACAGCAATGGAAGTACTGACAAAAAGTACTCTCGGGATTTCCTTTTAAAATTTGCAGAGCAATGCTCTGAGCTTCCCAAAGGGTTTGAAATCACGGCAGACATAGCTGAAGCTTTGATGGGTTCGAATATTAGTTCTCATGTTATTGTACGCGATGCACATCCTTCTCCCGGAAGAAATACAGATAGGTCAGGTGGGATGCCTCGGATGGATCGTCGTGGGAGTGGTGTTATTGAGGATGATAAATGGAATAAAGTGTCTGGTGCTTTTCATTCTGGCATGCGTTTGGATGGTAGTGGAGGTAATACAGATTTCAGACCTGGTCAAGGAAGCAATTTTGGTGTTTTAAGGAATCCACGCCCACAGGGAGCTATGCAATATGGTGGAGCAATTCTTTCTGGGCCAATGCAATCCATGGGAAACCAGGGAGGAATGCCAAGAAATAGCCCTGATGGAGAAAGGTGGCAGCGAGGTGCTAACTTCCAGCAGAGGGGTTTGATTCCATCTCCTTCTTCTCAATCTCCTTTGCAGACGATGCACAAAGCTGAGAAGAAGTATGAGGTGGGTAAAGTGACAGATGAGGAACAGGCGAAGCAGAGGCAGTTGAAAGGTATATTGAACAAGTTAACTCCCCAGAATTTTGAGAAGCTTTTTGAGCAGGTTAAAGCAGTTAATATTGACAATGTAGTCACTCTCACTGGTGTTATCTCACAAATCTTTGAGAAGGCCTTGATGGAACCCACCTTCTGTGAAATGTATGCCAATTTCTGTTTTCATTTGGCTGCTGCGTTGCCTGATCTCAGTCAAGACAATGAAAAGATAACATTTAAGAGATTATTGTTAAATAAGTGCCAGGAAGAATTTGAGAGGGGTGAGAGAGAGCAAGAAGAAGCTGATAAAGCTGATGAGGGTGAGGTTAAACAGTCTGATGAGGAAAGAGAAGCGAAACGATCCAAGGCTAGAAGACGAATGTTGGGTAATATCAGGTTAATTGGAGAACTATATAAGAAGAGAATGCTGACAGAGAGGATAATGCACGAGTGCATAAAAAAGTTACTGGGTCAGTGTCAGACTCCAGATGAAGAAGATATCGAAGCTTTGTGCAAACTGATGAGTACTATTGGGGAGATGATTGACCACCCCAAAGCCAAGGAACACATGGATGCATATTTTGAAAGGATTAAATTATTGTCAAACAACATGAATTTATCTTCGAGGGTGAGGTTCATGTTAAAGGATACCATTGATTTGAGAAAGAATAGATGGCAACAAAGGAGAAAAGTTGAAGGTCCAAAGAAGATTGAAGAGGTGCATCGGGATGCTTCTCAAGAGAGGCAATCCCAAGCTGGTAGACTGGGTCGTGGTATGGGTATTAGTTCACCAAGAAGGCCGCCTATGGATTTTGGTTCAAGAGGTTCATCTATGTTATCCCCTCCTAATGCTCAAATGGGTGGATTGCCTAATCAAATTCGTGGGTATGGTTCTCAGGATGTTCGTGGATATGAAAGGCAATCTTATGAGGCTAGGCCACTATCTATTCCCTTGCTTCAAAGATCTTCAGGTGATGAGTTAATAACCTTGGGACCCCAAGGTGGTCTTGCTAGGGGAATGGCCAGTAGAGGTCCACCTGCTGCTTCCAGTTTTGGCGGTCCTAATGGTTACAGTAATTTATCTGAGCGCCCTTCATACAGCCCTAGGGAGGACCTCACACCAAGATATGTTCCAAATAGATTTGCTGGTCCAACTACTTATGATCAATCAAGTGCTCCTGAGCAAAGTGTGAATTACAGTAACAGGGATTTGGGAAATGCAGATAGGTTTCTTGATAGACCTGTTGTACATCCACCTCCTGCCCGAGCACAAGAGACAGCACTCTCCCAGAATACCTCTTCAGAAAAGGGTTTGTCAGATGCGAAACTACAGAACATGTCCATGGCAGCAATTAAAGAATACTATAGTGCTAGAGATGTGAACGAAGTTGTTTTGTGCGTCAAAGATCTGAACTCTCCGAGCTTTCATCCTTCCATGGTTTCTCTTTGGGTGTCTGATTCATTTGAGAGAAAGGATACAGAGAGAGATCTTTTGGCCAAACTTTTGATCGACCTTGTGAAATCTCATGGCGGTACCTTAAGTCAAGCCCAGCTCTTCAAAGGGTTTGAATTTGTTCTAAGTACTTTGGAAGATGTGGTTACGGATGCCCCAAGAGCACCGGAGTATCTTGGTCGCATTTTTGCCAAAGCTATAACAGAGCATGTAGCCTCTTTGAAAGAGATTGGGCAGTTAATACGTGACGGCAGAGAGGAATCAAGTAGCCGCTTACAAATTGGACTTTCAGCTGACATTCTCGGAAGTACCTTGGAAGTGATACAAACAGAGAAGGGCGATGCATTCTTGAATGAGATCCAGACAAGCTCCAACTTGCAATTGCAGACCTTCCGTCCGCCAGAACCTATTAAATCCCGGAAACTAGAAAAATTCCTTTAG 5364 0.442 MSFNQSKSDKSDTAYRRTGRSTSFNQQRGNTGGSYVKAGTGAAAPSPSFSSSRSFNKKSNNHAQGGPSRVNPTQANSAESNYASAVRATPNGSHVQPQFHGGSDASVTNATAKPSESSAAQRSTRAVPKAPISKPPPVSSDSAAPTTPAKGDASNAFPFQFGSISPGIVNVMTIPARTSSAPPNIDEQKRDQARHDSLRPVPSVPTPTIPKQLPAKKDTGVTEQSKVGETHTGTRAKKDTQVSPLPPASLMQNHSVVPLTGMSMPMPYHHQSQAPVHYGAANPQIQSHGMSTAPLQMPLMSFPIGNAAQVQQPVFVPSLQPHPIHPQGMIHQHQGQNIGYIPQMGHQFPHQFANMGMGINPQYSPQQGGKFPGPRKTTPVKITHPDTHEELRLDRRADDGGSSGARSHSSMPSQSPSVKSFAASHANAQPPRINYAVNHGPQLSSHNTLPGNKVVTSIPGNVEQRSQEISRDMPNANSSTILGVSSVSIKPSGGSGVVDSSFANSSNSGDQKGGSPSSPVTSSDVYSLVPPKGPETCSEIPSQQSTAASVSAEKLTPASLVPSSTAFSENSVSALNEGRNKESLSRSNSLKDNQKKPEKKGQLQHQVAVQSSAVANEPSLAVDGGISDCVVSEIVGTKTPYSAVTANEDLSAIASGTFSATRESKPSSVEEKTTGSTQVSATASAEGPVTQAVDSLNNHKSDELDVLSREDKQLRQNKLVGDKPEISTLQISKIVNDDGGEISHLKNGASEVSTGVVTLSTGLQVQDEIESVGCSIDCDRMDDNLGTSTSAENSKDASLSRNGSVVGKEVTSIDYGTSDHQSSGDLETNLKHCKDSSEDSGTGSASLPAASVTMDRPILEPSKVKGTSKGKKKLKEFLQKADASGSTTDLYNAYKGPEEKKEAVASSETAGNSKQLPMDAPQPAAVENEQCGESKAELEDWEDAADISAPKLEVSDKTQQDSNGSTDKKYSRDFLLKFAEQCSELPKGFEITADIAEALMGSNISSHVIVRDAHPSPGRNTDRSGGMPRMDRRGSGVIEDDKWNKVSGAFHSGMRLDGSGGNTDFRPGQGSNFGVLRNPRPQGAMQYGGAILSGPMQSMGNQGGMPRNSPDGERWQRGANFQQRGLIPSPSSQSPLQTMHKAEKKYEVGKVTDEEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNVVTLTGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEADKADEGEVKQSDEEREAKRSKARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQCQTPDEEDIEALCKLMSTIGEMIDHPKAKEHMDAYFERIKLLSNNMNLSSRVRFMLKDTIDLRKNRWQQRRKVEGPKKIEEVHRDASQERQSQAGRLGRGMGISSPRRPPMDFGSRGSSMLSPPNAQMGGLPNQIRGYGSQDVRGYERQSYEARPLSIPLLQRSSGDELITLGPQGGLARGMASRGPPAASSFGGPNGYSNLSERPSYSPREDLTPRYVPNRFAGPTTYDQSSAPEQSVNYSNRDLGNADRFLDRPVVHPPPARAQETALSQNTSSEKGLSDAKLQNMSMAAIKEYYSARDVNEVVLCVKDLNSPSFHPSMVSLWVSDSFERKDTERDLLAKLLIDLVKSHGGTLSQAQLFKGFEFVLSTLEDVVTDAPRAPEYLGRIFAKAITEHVASLKEIGQLIRDGREESSSRLQIGLSADILGSTLEVIQTEKGDAFLNEIQTSSNLQLQTFRPPEPIKSRKLEKFL 1787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00957 1787 MobiDBLite consensus disorder prediction 1384 1405 - -
Trre13g00957 1787 Pfam MA3 domain 1606 1710 IPR003891 -
Trre13g00957 1787 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 362 1787 IPR045208 GO:0003743
Trre13g00957 1787 Gene3D - 1591 1787 - -
Trre13g00957 1787 SMART ma3_7 1600 1714 IPR003891 -
Trre13g00957 1787 Coils Coil 1241 1261 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 1581 1596 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 381 402 - -
Trre13g00957 1787 SMART if4_15 1159 1381 IPR003890 GO:0003723|GO:0005515
Trre13g00957 1787 Gene3D - 1159 1394 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 17 34 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 492 525 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 1 151 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 44 124 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 438 457 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 1011 1035 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 178 251 - -
Trre13g00957 1787 FunFam Eukaryotic translation initiation factor 4G 1159 1394 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 1251 1279 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 403 424 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 887 968 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 1509 1523 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 785 872 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 492 605 - -
Trre13g00957 1787 Pfam MIF4G domain 1159 1380 IPR003890 GO:0003723|GO:0005515
Trre13g00957 1787 MobiDBLite consensus disorder prediction 658 691 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 1540 1560 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 932 950 - -
Trre13g00957 1787 SUPERFAMILY ARM repeat 1153 1383 IPR016024 -
Trre13g00957 1787 SUPERFAMILY ARM repeat 1593 1782 IPR016024 -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 1491 1596 - -
Trre13g00957 1787 FunFam Eukaryotic translation initiation factor 4G 1593 1786 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 584 602 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 537 583 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 785 807 - -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 1384 1454 - -
Trre13g00957 1787 ProSiteProfiles MI domain profile. 1599 1723 IPR003891 -
Trre13g00957 1787 MobiDBLite consensus disorder prediction 359 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00957 Trre-Chr13 7824977 7833618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00957 1 1786 Eukaryotic Initiation Factors Gene Family AT3G60240 43.727 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00957 K03260 - gmx:100796636 2350.86