Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00956 ATGTCCTTCAATCAATCAAAGTCCGATAAGAGCGACACAGCGTACCGACGAACCGGTCGATCAACCAGCTTCAATCAGCAGCGAGGTAATACCGGCGGTGGTTCATACGTTAAGGCCGGCACCGCCGTCCCTTCTCCCTCACTCTCTTCTTCTCGAAGTTTTAACAAGAAGTCTAATAATCATGCACAAGGTGGAGGACCATCTAGGGTAGTAAACCCTACCCCAGCGAATGCTGCGAATTCAGCTCCGATTAATTATGCTTCTGCAGTCCGAGCAACCCCGAATGGTTCCCATATACAGCCACAATTTCATGGCGGTTCTGATGCATTGGCTACAAATGCAACTGCCAAGCCATCGGAATCATCAGCTGCACAGAAGAACACAAGAGTTGTTCCTAAAGCTCCTATTTCTCAACCTCCTCCCGTGAGTTCTGATGCTGCAGCTCCTACGACTCCTGCTAAGGATGCATCCAAAGCATTCCCATTTCAATTTGGATCTGTTAGTCCTAGCGTTATGAATGTGGTGAAAATTCCTGCTCGTACAAGCTCGGCTCCTCCTAATATAGATGAGCAGAAACGTGATCAGATTCGTCATGATTCTTCAAGGCCCGCGCTTTCTTTGCCAATACCTCCTGTTCCAAAGCAGCTTCCAGCAAGTAAGGATACAATTGTGTCCGACCAATCTAAGGGTGGGGAAACTCATACTGGTACAAGGACAAAAAAGGATGCTCAAGTGTCACATTTACCCCCAGCAAGCTTGATGCACAAGCCTTCTGTTGTTCCTCTAACTGGGATTTCAATGCCAATGCCAACGCCATATCACCAGGCACAGGCACAGGCTCCTCTACACTTTGGTGTTCTTAATCCACAGATTCAACCTCATGGTATGTCAACGGCATCTCTTCAGGGGCCTTTACCAATTGGAAACGCTGCTCAAGTGCAACGCCAGGTATTCGTTCCAGGTCTTCCACCCCATCCTATGCATCCTCAAGGATTTATGCATCAAGGCCAAAATATAGGTTACAGTCCTCAAATGGGTCATCAATTGTCCCACCAGTTTGGCAACATGGGTATAGGCATCAACCCACAATGTTCCCCCCAGAAAGGAGGAAAATTTGCTGGACCTCGTAAAACTACTCCTGTGAAAATAACTCACCCTGATACCCATGAAGAGCTTAGACTTGATAAAAAGGAAGATGATAGTGGGTCATCTGGTGCTAGGTCTCATTCTAGCCTGCCTTCTCAATCTCCGCCTGTCCAATCATTTCCAGCTTCTCATCCTATCAGTTACTATCAATCCAATTCTCCCTTTTATCAAACTCCTAGTTCTCTTCCTTTATCAAGTAGCCAGATAACCCCCAACACTCAGCCACCAAAATTAAATTATGCAGCGAGCCATGGTCCACAAAATGTTGGTCTCACAAATTCATCGTCTCATAATTCCCTGCCTGTTAATAAAACTGCCACTTCTATTTCTGGCAATGTTGAACCACCTAAACGAGAATTTTCCCATGATGTGCCTAATGCAATCTCATCAGCTATGTCAGGAGCATCTTCTGTGTCTATAAAGCCAAATGTTGGGTCTGCCGTTGTGGTCTCATCATTTGCCAATTCAATTTCGGGTGCTCAAAAGGATGGATCTCTTAGTTCCTCCACAACATCTAGTGATGCTTGCTCTTTCGTGCCACCAAAAGGGTCTGAAACTTATTCCAAAATCTCTTCAGAACAATCTACTGCTGAGAAGCTTATATCATCTTCCTTGTTACCTTCTTCACCTGCTTTGAGTGAGGATTCTGTTCCAGTATTATCTAATAATGAAGGCAGAAAAAAGGAATCTCTTAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAAGGACCATTGCAGCATCAGGTGGCTGTACAATCATCCGTGGCTAATGAACCTTCCCTAGCTGTTGATGGTGGCATCTCTGATTGTGTAGCTTCTGAAACTGCAGGAACTAAAACAATCCATTCTGCAGCAATTGCCAGTGAAGATTTATTAGCAGCAGCTTCAGCCCCAATATCAGCTACCAGTAAGAGCTTGCCTTCTACGACACTTGAAGAAACAACCAGTGGTTCTACACAGGTCTCTTCTTGTGCTTCAGCTGAAGGACTTGTTATTCAAGCCGCGGATAGTTTGGACAATCATAAGAGTGCTGAGGTAGATAAATTATCCCAAGAGGATAAACTGTTAAGACAGAATGATAGTGTACTTAGTAATGAAGCTATTTCTTCAACTTCTGGCTCATCAGATCAGCAATCTTCTGGTCTTTTAGAAACAACTTCAAAACATTGCAAGGATAATTCAGAGGATACTATTGCTGGCAGTGGCTCGGTGTCTCTTCCAGCAGCACCGGGTACTATGGACGGACCAATTTTAGAGCCAAGTAAGGTAAAAGGTGCATCAAAGGGGAAAAAGAAACGAAAGGAATTTCTTCAGAAAGCAGATGCTTCTGGGTCAACAGCTGATCTGTATAACGCATATAAGGGACCTGAGGAAAAGAAAGAAGCTGTTGCAAGTTCAGAGAGCACTGCCAATGTTTCTACTTCTGGAACTTTGAAGAAGTTGCCTGTGGATACTGCTCAGACAGATGCAGTTGCAAATGAACTTGAGGACTGGGAGGATGCTGCTGACATGTCCACTCCAAAACTTGATGTATCAGATAAAACTCAACAGGTTAGTGACAGAAGTGCAGTTACTGACAAAAAGTACTCTCGAGATTTCCTTTTGAAATTTGCAGAGAATTGCACTGGTCTTCCTGAAGGGTTTGAAATCACAGCAGACTTAGCTGAGGCTTTGATGACTTTTAATGTTAGTTCCCATGTTATTGTGCACGACTCACATCCTTCTCCTGGAAGAAAGACAAATAGGTCAGGTGGGATGTCTTGGATGGATCGTCGTGGGAGTGGTGTTATTGAGTATGATAAATGGAATAAAGTGCCTGGTGCTTTTCATTCTGGCATGCGTTTGGATGGTAGTGGAGGTAATACAGAATTTAGACCTGGTCAAGGAAGCAATTTTGGTGTTTTAAGGAATCCACGCCCACAGGGAGCTATGCAACATGGTGGAGGGATTCTTTCTGGGTCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAAGAATAGCCCTGATGGTGAAAGGTGGCAGCGTGCTGCTAACTTCCAGCAGAGGGGTTTAATTCCATCTCCTTCTTCTCAATCTCCTTTGCAGACGATGCACAAAGCTGAGAAGAAGTATGAGGTGGGTAAGGTGACAGATGAGGAACAGGCAAAACAGAGGCAGTTGAAAGGTATACTGAACAAGTTAACTCCCCAGAATTTTGAGAAGCTTTTTGAGCAGGTTAAAGCAGTTAATATTGATAATGTAGTTACTCTCACTGGTGTCATATCACAAATCTTTGAGAAGGCCTTGATGGAACCCACCTTCTGTGAAATGTATGCCAATTTCTGTTTTCATCTGGCAGCTGCGTTGCCTGATCTCTGTCAAGACAATGAAAAGATAACATTTAAGAGATTATTGTTAAATAAGTGCCAGGAAGAATTTGAGAGGGGTGAGAGAGAGCAAGAAGAAGCTGATAAAGCTGATGAGGGTGAGGTTAAACAGTCTGATGAGGAAAGAGAAGCGAAACGATTCAAGGCTAGAAGACGAATGTTGGGTAATATCAGGTTAATTGGAGAACTATATAAGAAGAGAATGCTGACAGAGAGGATAATGCACGAGTGCATAAAAAAGTTACTGGGTCAGTGTCAGACTCCAGATGAAGAAGATATTGAAGCTTTGTGCAAACTGATGAGTACTATTGGGGAGATGATTGACCACCCCAAAGCCAAGGAGCACATGGATGTATATTTTGAAAGAATTAAATTATTGTCAAACAACATGAATTTATCTTCTAGGGTGAGGTTCATGTTAAAGGATACCATTGATTTGAGAAAGAATAGATGGCAACAAAGGAGAAAAGTTGAAGGCCCAAAGAAGATTGAAGAGGTGCACCGGGATGCTTCCCAAGAGAGGCAATCCCAAGCTGGTAGGCTGGGTTGTGGTATGGGTATTAGCACACAAAGATGGACCCCTATGGATTTTGGTTCAAGAGGCTCATCTATCTTATCCCCTCCTAATGCTCAGATGGGTGGATTGCCTAATCAAATGCGTGGGTATGGTTCTCAGGATGTTCGTGGATATGAAAGGCAATCTTATGAGGCTAGGCCACTATCTATTCCCTTGCTGCAAAGATCTACAGGTGATGAGTTAATAACCTTGGGACCCCAAGGTGGTCTTGCTAGAGGAATGGCCAGTAGAGGTCCACCTGCTGCTTCCAGTTTTGGCGGTCCTAATGGTTACAGTAATTTATCGGTGCGCCCTTCATACAGCCCTAGGGAGGACCTCACTCCAAGATATGTTCCAGATAGATTTTCTGGTCAGACTACTTATGATCAATCAAGTGTTCTAGAGCAGAATATGAATTATGGTAACAGGGATTTGAGAAATGTAGATAATAGGATTCTTGATAGACCTGTTGTAAACCCACCTCCTGCCCGAGCACAAGAGACATCAGACTTCCAGTATACGTCTTCAGAAAATAGTTTGTCAGAAGAGCGACTACAAAACATGGCAATGGCAGCAATTAGAGAATATTATAGTGCTAGAGATGTAAACGAAGTTGTTTTGTGTGTCAAAGATCTGAACTCTCCAAATTTTCATCCTTCCATGGTTTCTGTTTGGGTCACAGACTCATTTGAGAGGAAGGACACAGAAAGAGATCTTTTGGCCAAACTGCTGATCGATCTTGTAAAATCTCATGGTGGCACCTTAAGTCAAGCCCAGCTCATTGGAGGGTTTGAATCTGTTTTAAATACTTTGGAAGATGGGGTTACAGATGCCCCAAAAGCACCAGAGTTTCTTGGCCGCATTTTTGCCAAAGCTATAACAGAGCATGTAGTCTCTTTGGAGGCGATTGGGCGGTTAATACACAATGGTGGAGAAAGCCTCTTACAAATTGGACTTGCAGCTGATGTTCTTGGAAGCACCTTGGAAGTGATACAAACTGAGAAGGGCGATGCTTTTTTGACCGAGATCCAGAGAAGCTCCAACTTGCAATTACAGACTTTCCGGCCACCAGCACCGATTAAATCACGAAAACTAGAAAAATTCATTTAG 5184 0.4358 MSFNQSKSDKSDTAYRRTGRSTSFNQQRGNTGGGSYVKAGTAVPSPSLSSSRSFNKKSNNHAQGGGPSRVVNPTPANAANSAPINYASAVRATPNGSHIQPQFHGGSDALATNATAKPSESSAAQKNTRVVPKAPISQPPPVSSDAAAPTTPAKDASKAFPFQFGSVSPSVMNVVKIPARTSSAPPNIDEQKRDQIRHDSSRPALSLPIPPVPKQLPASKDTIVSDQSKGGETHTGTRTKKDAQVSHLPPASLMHKPSVVPLTGISMPMPTPYHQAQAQAPLHFGVLNPQIQPHGMSTASLQGPLPIGNAAQVQRQVFVPGLPPHPMHPQGFMHQGQNIGYSPQMGHQLSHQFGNMGIGINPQCSPQKGGKFAGPRKTTPVKITHPDTHEELRLDKKEDDSGSSGARSHSSLPSQSPPVQSFPASHPISYYQSNSPFYQTPSSLPLSSSQITPNTQPPKLNYAASHGPQNVGLTNSSSHNSLPVNKTATSISGNVEPPKREFSHDVPNAISSAMSGASSVSIKPNVGSAVVVSSFANSISGAQKDGSLSSSTTSSDACSFVPPKGSETYSKISSEQSTAEKLISSSLLPSSPALSEDSVPVLSNNEGRKKESLSRSNSLKDNQKKGPLQHQVAVQSSVANEPSLAVDGGISDCVASETAGTKTIHSAAIASEDLLAAASAPISATSKSLPSTTLEETTSGSTQVSSCASAEGLVIQAADSLDNHKSAEVDKLSQEDKLLRQNDSVLSNEAISSTSGSSDQQSSGLLETTSKHCKDNSEDTIAGSGSVSLPAAPGTMDGPILEPSKVKGASKGKKKRKEFLQKADASGSTADLYNAYKGPEEKKEAVASSESTANVSTSGTLKKLPVDTAQTDAVANELEDWEDAADMSTPKLDVSDKTQQVSDRSAVTDKKYSRDFLLKFAENCTGLPEGFEITADLAEALMTFNVSSHVIVHDSHPSPGRKTNRSGGMSWMDRRGSGVIEYDKWNKVPGAFHSGMRLDGSGGNTEFRPGQGSNFGVLRNPRPQGAMQHGGGILSGSMQSMVNQGGMQKNSPDGERWQRAANFQQRGLIPSPSSQSPLQTMHKAEKKYEVGKVTDEEQAKQRQLKGILNKLTPQNFEKLFEQVKAVNIDNVVTLTGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLCQDNEKITFKRLLLNKCQEEFERGEREQEEADKADEGEVKQSDEEREAKRFKARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQCQTPDEEDIEALCKLMSTIGEMIDHPKAKEHMDVYFERIKLLSNNMNLSSRVRFMLKDTIDLRKNRWQQRRKVEGPKKIEEVHRDASQERQSQAGRLGCGMGISTQRWTPMDFGSRGSSILSPPNAQMGGLPNQMRGYGSQDVRGYERQSYEARPLSIPLLQRSTGDELITLGPQGGLARGMASRGPPAASSFGGPNGYSNLSVRPSYSPREDLTPRYVPDRFSGQTTYDQSSVLEQNMNYGNRDLRNVDNRILDRPVVNPPPARAQETSDFQYTSSENSLSEERLQNMAMAAIREYYSARDVNEVVLCVKDLNSPNFHPSMVSVWVTDSFERKDTERDLLAKLLIDLVKSHGGTLSQAQLIGGFESVLNTLEDGVTDAPKAPEFLGRIFAKAITEHVVSLEAIGRLIHNGGESLLQIGLAADVLGSTLEVIQTEKGDAFLTEIQRSSNLQLQTFRPPAPIKSRKLEKFI 1727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00956 1727 MobiDBLite consensus disorder prediction 362 427 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 95 132 - -
Trre13g00956 1727 Gene3D - 1101 1336 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 541 630 - -
Trre13g00956 1727 SUPERFAMILY ARM repeat 1536 1722 IPR016024 -
Trre13g00956 1727 SMART ma3_7 1543 1657 IPR003891 -
Trre13g00956 1727 SUPERFAMILY ARM repeat 1095 1325 IPR016024 -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 839 858 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 17 34 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 1 82 - -
Trre13g00956 1727 Pfam MA3 domain 1549 1655 IPR003891 -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 42 67 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 181 255 - -
Trre13g00956 1727 Coils Coil 1183 1203 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 441 505 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 1328 1347 - -
Trre13g00956 1727 SMART if4_15 1101 1323 IPR003890 GO:0003723|GO:0005515
Trre13g00956 1727 MobiDBLite consensus disorder prediction 541 607 - -
Trre13g00956 1727 Gene3D - 1534 1727 - -
Trre13g00956 1727 Pfam MIF4G domain 1101 1322 IPR003890 GO:0003723|GO:0005515
Trre13g00956 1727 MobiDBLite consensus disorder prediction 1328 1357 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 1514 1533 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 405 427 - -
Trre13g00956 1727 ProSiteProfiles MI domain profile. 1542 1666 IPR003891 -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 95 154 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 382 404 - -
Trre13g00956 1727 FunFam Eukaryotic translation initiation factor 4G 1536 1726 - -
Trre13g00956 1727 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 359 1727 IPR045208 GO:0003743
Trre13g00956 1727 MobiDBLite consensus disorder prediction 685 705 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 1436 1455 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 441 496 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 1193 1216 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 747 824 - -
Trre13g00956 1727 FunFam Eukaryotic translation initiation factor 4G 1101 1336 - -
Trre13g00956 1727 MobiDBLite consensus disorder prediction 747 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00956 Trre-Chr13 7811145 7819132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00956 1 1726 Eukaryotic Initiation Factors Gene Family AT3G60240 45.877 0.0 1237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00956 K03260 - gmx:100798562 1875.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00956 13 7811145 7819132 Trre13g00956 13 7811145 7819132 ECH
Trre15g01357 15 10528813 10531488 Trre13g00956 13 7811145 7819132 PCT